Gene Tgr7_3023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_3023 
Symbol 
ID7315951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand+ 
Start bp3164703 
End bp3165764 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content64% 
IMG OID643617921 
Producttype IV pilus assembly protein PilM 
Protein accessionYP_002515080 
Protein GI220936181 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4972] Tfp pilus assembly protein, ATPase PilM 
TIGRFAM ID[TIGR01175] type IV pilus assembly protein PilM 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATAGGGT TCAGCCGCAA GAAGCCGCCC TTGCTGGGCA TCGACATCAG CTCGACCTCG 
GTCAAGCTGG TGGAACTCAG CCAGTCCGGC GGCAAATACC GGGTTGAAAG CTACGCCGTT 
GAGCCGCTGC CGGCCAACGC CGTGGTGGAA AAGAACATCC AGGAACCCGA GGCCGTGGGC 
GATGCCATCA AGAAGGCCCA CAAGCGTTCC GGGAGCAAGA CCCGCACCTG CGCCATGGCC 
GTACCCTCCT CCGCCGTGAT CACCAAGGTG ATCACCATGC CCGCCTCCAT CAAGGAGGAT 
GAGATGGAAG GCCAGATCCA GATCGAGGCG GATCAGTACA TCCCCTACGC CCTGGAAGAG 
GTCAACCTGG ATTTCGAGGT GCTGGGCCCC AGTGCCAAGA ACCCCGAGAC CGTGGACGTC 
CTGCTCTCCG CCTCCCGCAG TGAAAACGTG GAGCTGCGGG TAAGCGCCGC CGAACTGGCC 
GGCCTGGAAC CCGTGGTCAT GGATGTCGAG GCCTATGCCA TCGAGCACAC CTACCCCCTG 
CTGCTCGCGC AGATGGAGGA TGTGGACGCG ACGGGCACCG TGGCGGTGAT CGACATCGGC 
GCCACCATGA CCAGCATCAA CATCCTCAGC GACAGCAAGC TCATCTACAC CCGCGAACAG 
ACCTTCGGTG GCAAGCAGCT CACCGAGGAG ATCATGCGCC GCTACGGCCT GTCCTATGAC 
GAGGCCGGCC TGGCCAAGAA GGAGGGCGGC CTGCCGGACA ACTACGCCCC CGAGGTGCTG 
GAACCCTTCA AGGACACCAT GGTGCAGCAG GTGGGTCGTT TCCTGCAGTT CTTCTACGCC 
GCCAGCCAGC ACAACCACGT GGATCAGATC GTACTCGCCG GAGGCTGCGC CGCGATCCCC 
GGCGTGGACG AACTGATCGA ATCGCGGCTC GGCACCCGCA CCCTGATCGC CAACCCCTTC 
GGGCGCATGT CCCTGAGTAC CCGCGTCAAC CCGCAGCGAC TCGGCAATGA TGCCCCCTCG 
CTCATGATCG CCTGCGGCCT GGCCATGAGG AGCTTCGACT GA
 
Protein sequence
MIGFSRKKPP LLGIDISSTS VKLVELSQSG GKYRVESYAV EPLPANAVVE KNIQEPEAVG 
DAIKKAHKRS GSKTRTCAMA VPSSAVITKV ITMPASIKED EMEGQIQIEA DQYIPYALEE 
VNLDFEVLGP SAKNPETVDV LLSASRSENV ELRVSAAELA GLEPVVMDVE AYAIEHTYPL 
LLAQMEDVDA TGTVAVIDIG ATMTSINILS DSKLIYTREQ TFGGKQLTEE IMRRYGLSYD 
EAGLAKKEGG LPDNYAPEVL EPFKDTMVQQ VGRFLQFFYA ASQHNHVDQI VLAGGCAAIP 
GVDELIESRL GTRTLIANPF GRMSLSTRVN PQRLGNDAPS LMIACGLAMR SFD