Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_3020 |
Symbol | |
ID | 7315948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | + |
Start bp | 3160087 |
End bp | 3161142 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643617918 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_002515077 |
Protein GI | 220936178 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.404032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGAAC TGAAAAACGA TCGCCTGCTG CGTGCCCTGT TGCGCGAACC CGTGGACACC ACGCCCGTGT GGATCATGCG TCAGGCGGGC CGTTATCTGC CCGAGTACCG GGCCACCCGG GCCCGGGCGG GCAGCTTCAT GGATCTGTGC CAGAGCCCGG AGATGGCCTG CGAGGTCACG CTTCAGCCCC TGGAGCGCTT CCCCCTGGAT GCGGCCATCC TGTTCTCCGA CATCCTCACC ATCCCCGACG CCATGGGCCT GGGCCTGTAT TTCTCCGAAG GGGAAGGCCC GCGCTTCGAG CGCCCGGTAC AGGACGCCGC CGCCATTCGC GCCCTGGGCG TGCCCGATCC CGAGACTGAA CTGCGCTACG TCACCGACGC GGTGCGCTTG ATCCGCCGCG AACTGGACGG ACGGGTGCCC CTGATCGGCT TCTCCGGCAG CCCCTGGACC CTGGCCACCT ACATGGTGGA AGGCGGTTCT TCCAAGGAAT TCGCCCGCAT CAAGGGCATG CTCTACGACG ATCCGTCCAC CCTGCACCAC CTGCTGGGGG TGCTGGCCGA GGCGGTCACC GTGTACCTGA ACGCACAGAT CGCCGCCGGC GCCCAGGCGG TGATGGTGTT CGACACCTGG GGCGGCAGCC TGACCCCCGA GGGCTACCGG GAGTTCTCAC TCGCCTACAT GCAGCGCATC GTGGCGGGAC TGACCCGGGA GCACGAGGGT CGGCGCGTGC CCGTGACCCT GTTCACCAAG GGCGGCGGCG CCTGGCTGGA GGTCATGGCG GAAACCGGCT GCGACGCCCT GGGACTGGAC TGGACGGTGA ACATCGGCGA GGCGCGCCGG CGCGTCGGCG ACCGGGTGGC GCTGCAGGGC AACCTGGATC CGGCGGTACT CTACGCCTCC GCCGAGCGCG TGCGCGCAGC CGCCCGCAAG GTGGTCGAGG ACTTCGGCCC CGGCAGCGGC CATGTCTTCA ATCTGGGCCA CGGCATCCAC CCGGGCATCG ACCCGGAGAA GGTCGCGGCC CTGGTGGATG AGGTGCACAA GGCCGGTATG AAGTAG
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Protein sequence | MNELKNDRLL RALLREPVDT TPVWIMRQAG RYLPEYRATR ARAGSFMDLC QSPEMACEVT LQPLERFPLD AAILFSDILT IPDAMGLGLY FSEGEGPRFE RPVQDAAAIR ALGVPDPETE LRYVTDAVRL IRRELDGRVP LIGFSGSPWT LATYMVEGGS SKEFARIKGM LYDDPSTLHH LLGVLAEAVT VYLNAQIAAG AQAVMVFDTW GGSLTPEGYR EFSLAYMQRI VAGLTREHEG RRVPVTLFTK GGGAWLEVMA ETGCDALGLD WTVNIGEARR RVGDRVALQG NLDPAVLYAS AERVRAAARK VVEDFGPGSG HVFNLGHGIH PGIDPEKVAA LVDEVHKAGM K
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