| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2972 |
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| Symbol | |
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| ID | 7318269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 3110282 |
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| End bp | 3112567 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643617872 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002515031 |
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| Protein GI | 220936132 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.542463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACTGC ACCCCACCCT TGCTGCCGTC TTCTGGCTGC TGCTCCTGTC CCTGGCCTGG
GCGCCCGCCC AGGCCCAGGC CCAATTCCAG ACACTGAACA GCGGACAGGT CAGCGGTGAG
ACCCTGCGGG TGGGCATCTA CGTGAACCCG CCCCTGATCG GCATCGATGC CGAGGGCCCC
CGGGGCCTGG TTATCGACCT GCTGGAAGAT GCCGCGCGCC AGGAGGGCTG GAAGATCCAT
TACGTGGCCG CCTCCTTCGC GGAGCTGCTG GAGATGGGCC AAAACCGGGA GATCGACCTG
ATCGCCGCCA TCGCCTACAC CCCGGAGCGG GCCCAGGTGC TGCAGTTCAA CCGCGAGGCC
ATGCTCACCA ACTGGGGCGT GATCTACAGG CACCGGGACG TAGTCGTGGA TTCCGTCCTG
GACCTGGCCG GCGCGCGCAT TGCCGTGAAG GCCGGCGACA CCCACGCCCG GGCCCTGGAG
TCCCTGCTGC GCGAGTTCAA CGTGCAGGCG GAGCTCCATC CCGTGGCCGA CTACCGGGAG
GTGATGCAGC TGCTTGCCCA TGGCGAGGTG GACGCCGCCG CCGTGAACCG CCTGGTGGGA
CGCCAGTTCC GGGTGCCGGA GGGCATCCCC ACCCACATCA TCTTCAACCC GGTGGAACTG
CACTTCGCCA GCGCCCGCCC GGAGATGGCG CCGGTCCTGC AGGCCATCGA CCGGCACCTC
AGAGAGCTCA AGACCCAGCC CGGCTCTATG TATCACTTGA GCATGAACCG CTGGCTGGGC
GATACCGGAG AGATGCCCAG ACAGCTTCCC GGCTGGCACC CGGTGATTCT TGCCGGCATC
GTGCTGCTCA CGCTACTGGT CATCGGCCTG GCCCTGTTCC TGCGCCAGCA GATCCGCCAC
CACACCCGGG CCCTGCGCGC CCAGTCCGAG GCCCTGGCCC AGGAGGTCCG GGAGCGCGAG
CAGGCCCAGG AACGGCTCAA CGAACTGGCC TACTCCGACA GCCTGACCCA TCTGCCCAAC
CGCACGCTGT TCCAGGACCG CCTGCACCAG GCCATGGAAT ACGCCAAGCG CCACGAGCGG
CTGATCGCCC TGCTGTTCAT CGACCTGGAC GACTTCAAGC GGGTCAACGA CAGCCTGGGG
CATGCGGCCG GCGACCGGCT GCTGCAGGAG ATCGCCCGGC GCTTCGGCCG GGTGCTGCGC
GAGACCGACA CCCTGGCGCG CCTGGGGGGC GACGAGTTCA CCGTGATCCT CACCGACATC
CAGCGCCCCG AGGATGCGGT CACCTTCGTG CGCAAGCTGC TGGACACCCT GCGCGCGCCC
TTCATGCTGG GCGAACAGAG CATCACCATG AGCGCCAGCA TCGGCATCAC CCTCTATCCC
AGCGACGACA CCGCGGAGGC GGACCTGCTC AAGGACGCCG ACACCGCCAT GTACCAGGCC
AAGTCCCGGG GCAAGAACAC CTTCGACTTC TACGCGCCGG AACTGACCCA GAGCGTGCGC
GCCCGGTTGA CCATGGAGGG AGATCTGCGC GCCGCCCTGG ACACGAACCA GTTCCTGCTC
CACTACCAGC CCATCGTCTC CCTCAACGGC GCGGGCGTGC AGGGGCTCGA GGCCCTGGTG
CGCTGGCAGC ACCCGGTGCG CGGCCTGGTG CCGCCGGACG AATTCATCCC CGTGGCCGAG
GATTCCGGGC TGATCCACGA GATCGGCGAC TGGGTGATCG ATGCCGCCTG CGCGCAGCTG
GCCCAGTGGG ACGCACGGGG GCTTTCACAC CTGACCCTGG CCATCAACCT CTCCCCCGTG
CAGTTCCGCC GCGACGGCCT GGTGAGCCGC ATCGCCCGCC GCCTGCGCCA GCACAGCATC
GCCAGCGAGC GCCTGCACCT GGAGATCACC GAGTCCCTGC TCATGGAGCA GAACCGCCAC
GTGGCGGAGA CCCTGCAGAC CCTGGATGCC ATGGGCATCG GCCTGTGCAT CGACGACTTC
GGCACCGGCT ATTCGGCGCT CAACTACCTG CGTCACTTCC CCATCCGGCA GCTCAAGGTG
GACAGGAGCT TCGTGGAGGA CATGCTGCAC GCCGAGGACA CCCGTGCCCT GGTGCGCGCC
ATCGTGCTCA TGGCCCACGC CCTGCGCCTG GAGGTGGTGG CCGAGGGCGT GGAGGAGAAA
TCCCAGCTGG AGCTGCTGCG GGAGATGGGC TGCGACCAGG TGCAGGGCTA CCTGCTGTCC
CGGCCCCTGC CCGCCGCTGA GATCCCCGGC TGGATCGAGT CCCAGCGGCT GCGCATCGTG
AGCTGA
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| Protein sequence | MRLHPTLAAV FWLLLLSLAW APAQAQAQFQ TLNSGQVSGE TLRVGIYVNP PLIGIDAEGP
RGLVIDLLED AARQEGWKIH YVAASFAELL EMGQNREIDL IAAIAYTPER AQVLQFNREA
MLTNWGVIYR HRDVVVDSVL DLAGARIAVK AGDTHARALE SLLREFNVQA ELHPVADYRE
VMQLLAHGEV DAAAVNRLVG RQFRVPEGIP THIIFNPVEL HFASARPEMA PVLQAIDRHL
RELKTQPGSM YHLSMNRWLG DTGEMPRQLP GWHPVILAGI VLLTLLVIGL ALFLRQQIRH
HTRALRAQSE ALAQEVRERE QAQERLNELA YSDSLTHLPN RTLFQDRLHQ AMEYAKRHER
LIALLFIDLD DFKRVNDSLG HAAGDRLLQE IARRFGRVLR ETDTLARLGG DEFTVILTDI
QRPEDAVTFV RKLLDTLRAP FMLGEQSITM SASIGITLYP SDDTAEADLL KDADTAMYQA
KSRGKNTFDF YAPELTQSVR ARLTMEGDLR AALDTNQFLL HYQPIVSLNG AGVQGLEALV
RWQHPVRGLV PPDEFIPVAE DSGLIHEIGD WVIDAACAQL AQWDARGLSH LTLAINLSPV
QFRRDGLVSR IARRLRQHSI ASERLHLEIT ESLLMEQNRH VAETLQTLDA MGIGLCIDDF
GTGYSALNYL RHFPIRQLKV DRSFVEDMLH AEDTRALVRA IVLMAHALRL EVVAEGVEEK
SQLELLREMG CDQVQGYLLS RPLPAAEIPG WIESQRLRIV S
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