Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_2918 |
Symbol | |
ID | 7317023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 3062255 |
End bp | 3063289 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643617818 |
Product | twitching motility protein PilT |
Protein accession | YP_002514978 |
Protein GI | 220936079 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.683879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACATTA CGCAGCTGCT TGCGTTTGCG GTCAAGAATG GCGCCTCGGA CCTGCACCTC TCCGCCGGGC TGCCGCCCAT GATCCGCGTC GACGGCGACG TGCGCAGGAT CAACGTACCC GCCCTGGACC ACAAGGCTGT CCACGGCATG GTGTACGACA TCATGAACGA CAAGCAGCGC AAGGACTACG AGGAGTTCCT GGAAACGGAC TTCTCCTTCG AGATCCCCGG CCTGGCGCGC TTCCGTGTCA ACGCCTTCAA CCACAACCGC GGCGCCGGCG CGGTGTTCCG AACCATCCCG AGCAAGATCC TCACCCTCGA AGAACTCAAC TGCCCGAAGA TCTTCGAGCA GATCTCCGAC TACCCGCGCG GCATCGTGCT GGTCACCGGG CCCACCGGCT CCGGCAAGTC CACCACCCTG GCCGCCATGA TCAACCACAA GAACGAATCC GAGTACGGGC ACATCCTCAC CGTGGAGGAC CCGATCGAGT TCGTGCACGA GAGCAAGAAG TGCCTGGTCA ACCAGCGCGA GGTGCACCGC GACACCCTGG GCTTCAACGA GGCCCTGCGC TCGGCCCTGC GTGAGGACCC GGACACCATC CTGGTGGGCG AGATGCGCGA TCTGGAGACC ATCCGACTGG CCCTGACCGC CGCCGAGACC GGTCACCTGG TGTTCGGCAC CCTGCACACC AGTTCCGCCG CCAAGACCAT CGACCGTATC GTGGACGTGT TCCCCGCCGC GGAGAAGGAC ATGGTGCGCG CCATGCTGTC GGAGTCCTTG CGGGCGGTGA TCTCCCAGAC CCTGCTCAAG CGCATCGGCG GCGGGCGCGT GGCGGCCCAC GAGATCATGC TGGGCACCCC GGCCATCCGC AACCTGATCC GTGAAAACAA GATCGCCCAG ATGTACTCGG CCATCCAGAC CAGCCAGGGC ATGGGCATGC AGACCCTGGA CATGAGTCTC AAGGAGCTGC TCGCCAAGGG CATCATCAGC AAGGAAGACG CACGCCGCAA GGCCGCCAAC CCGGACGCCC TCTAG
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Protein sequence | MDITQLLAFA VKNGASDLHL SAGLPPMIRV DGDVRRINVP ALDHKAVHGM VYDIMNDKQR KDYEEFLETD FSFEIPGLAR FRVNAFNHNR GAGAVFRTIP SKILTLEELN CPKIFEQISD YPRGIVLVTG PTGSGKSTTL AAMINHKNES EYGHILTVED PIEFVHESKK CLVNQREVHR DTLGFNEALR SALREDPDTI LVGEMRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRI VDVFPAAEKD MVRAMLSESL RAVISQTLLK RIGGGRVAAH EIMLGTPAIR NLIRENKIAQ MYSAIQTSQG MGMQTLDMSL KELLAKGIIS KEDARRKAAN PDAL
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