| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2916 |
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| Symbol | |
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| ID | 7317021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 3059694 |
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| End bp | 3060902 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643617816 |
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| Product | type II secretion system protein (twitching motility protein) |
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| Protein accession | YP_002514976 |
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| Protein GI | 220936077 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.465688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATCG AACCCTACCT GAAACTCATG GCGCAGAAGA ATGCGTCCGA CCTGTTCTTC
ACCGTGGGGG CGCCTGCGAG CGTGAAGATC GAGGGCGAGA TGCGTCCCAT CAGCCGGCAT
ACCATGGCGC CGGGCTCGGT CAGGGACATG GCCTACGAGC TGATGGACGA GCGCAAGATC
CAGGAGTTCG AACGTACCCG GGAGATGAAC ATCGGCATCT CGGTGGAGGA GCTGGGTCGC
TTTCGCGTGA ACATCTACGT GCAGCGCGGC GAGGTCTCCA TGGTGATCCG CTACATCAAG
TCCGATGTGC CGAGCATCGA GCAGCTGCAC CTGCCCCACG TGCTCAAGGA CCTGGTGCTC
AACAAGAACG GCCTGGTGCT GGTGGTGGGT TCCACGGGCT CGGGCAAGTC GACCTCGCTG
GCGGCCATGC TGGATTACCG CAACGCCAAC AGCTATGGAC ACATCCTCAC GGTGGAGGAT
CCCATCGAGT ATTCCTTCAC CCACCGCAAG TCCATCGTGG GCCAGCGGGA AGTGGGTCTC
GATACGCTCT CCTACGAGAA CGCCCTGCGC GAGGCCATGC GCGAGGCGCC GGACATGATC
ATGATCGGCG AGATCCGTGA CCGTGAAACC ATGGAGGCGG CGCTCACCTA CGCCGACACC
GGCCACCTGG TGCTCTCCAC CCTGCACGCG GTCAACGCCA ACCAGGCCCT GGACCGTATC
ATCAACTTCT TCCCGCCGGA CTCCCGCCGC CAGATCCTCA TGGACCTGTC CCTGAACATC
AAGGGCATCA TGTCCCAGCG CCTGGTGGTC ACCAAGGATG GCAAGCGCAT GCCGGCCACC
GAGGTGTTGC TCAACACGCC CTACATCTCG GAACTGATTC GCAAGGGGGA GATCAGCGGC
ATCAAGGACA TCATCGAGAA GGGCGCGTCG GTAGGTATGC ACACCTTCGA CCAGTCACTG
TTCGAGCTCT ACAAGGCGGG CACCATCACC CTGCCCGAGG CCCTGTCCAA GGCGGACTCC
CGGGGCGACC TGGAATGGCG CATCCATTTC GGCGGCGGCG TGAAGTCCCT GAAGTCCACC
GACGATTCCC TGCAGATGCC CAGTGACATG GTCAACCTGG AGCCTCCCGC CGATGGCGGT
CGCAAGCCCG CCACCCACTT CGATGACCTG AAACCGCTCT CGGAGACCAG CCTGGATAAA
GAGGACTAA
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| Protein sequence | MSIEPYLKLM AQKNASDLFF TVGAPASVKI EGEMRPISRH TMAPGSVRDM AYELMDERKI
QEFERTREMN IGISVEELGR FRVNIYVQRG EVSMVIRYIK SDVPSIEQLH LPHVLKDLVL
NKNGLVLVVG STGSGKSTSL AAMLDYRNAN SYGHILTVED PIEYSFTHRK SIVGQREVGL
DTLSYENALR EAMREAPDMI MIGEIRDRET MEAALTYADT GHLVLSTLHA VNANQALDRI
INFFPPDSRR QILMDLSLNI KGIMSQRLVV TKDGKRMPAT EVLLNTPYIS ELIRKGEISG
IKDIIEKGAS VGMHTFDQSL FELYKAGTIT LPEALSKADS RGDLEWRIHF GGGVKSLKST
DDSLQMPSDM VNLEPPADGG RKPATHFDDL KPLSETSLDK ED
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