| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2542 |
|---|
| Symbol | |
|---|
| ID | 7315639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 2682644 |
|---|
| End bp | 2683846 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643617444 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002514605 |
|---|
| Protein GI | 220935706 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC ACAACAAGCG CTGGTATCTG CGCCACCCGG TGGTAGTCAT CGTGCTGGCG
CAGCTGTTCG GCACCTCGCT GTGGTTCAGC GTCAACGGCG TGGCCCTGTC TCTGGAGCGC
GAGACCGGGC TCACGGATGC CGGGCTGGGT CTGCTCACCG TGGCCGTGCA GGCAGGTTTC
ATCACCGGCA CCCTGCTGCT GGCCATCACC GGGCTGGCCG ACCGCTTCCC TGCCAGCCGG
CTGTTCGCCG CGGCTGCCGT GAGCGGCGCT GTCATCAATG CCGCCTTCAT CCCCGTCGCC
GGCGACTTCA GCCTCGCGAT GGCCCTGCGC TTTGCCACCG GCCTGTGCCT GGCCGGCATC
TACCCCCTGG GCATGAAGCT GGTGGTGAGC TGGACACCCC GGCACGCGGG CCTGGCCCTG
GGTTGGCTGG TGGGCATGCT CACCCTGGGC ACCGCCCTGC CCCACCTGTT GCGCGGCGCC
ACCCTGGAAC TGCCCTGGCA GGCACCGCTG CTGCTCGCCT CCCTGCTGGC CCTGTTCGCC
GCCGTGATGG TGCGCGCCCT GGGCGATGGC CCGCACCTGC CCGCCACCGC CTCCGGCGGA
CGGCCCTGGT CCGGGCTCGC GGCATTCCGG CGCCGCCCGT TCCGTGCCGC CGCCCTGGGC
TATTTCGGCC ATTGCTGGGA GTTGTATGCC TTCTGGACCC TGGCGCCGCT GCTGGTATTG
CGGGAACTCG GGCGTCTGGA CCTTTCCCCG CAGTGGATGC CCTGGCTGGC CTTCGGCGTC
ATCGGCATCG GCGCGCTGGG TTGCGTGCTG GGCGGGCGGC TAAGCCGCAG CCAGGGCAGC
CTGCGCGTGG CCCGGGTCGC CCTCGGCGTG TCCGGTGCCC TGTGCCTCAT CTATCCGCTG
CTCGGTGAGG CCGCACCGCT CCTGCTGCTG GGTCTGCTGT TCCTCTGGGG CCTCACGGTC
ATCGCCGACT CCCCCCAGTT CACCACCCTC GCCTCCCTGA GCGCGCCCCG GGACCGCCTG
GGTGCTGCCC TGGCCATGAT GAACGCCGTG GGCTTTGCCC TCACGCTGCC GTCCATCGCG
CTGGTCATGC ACCTGTGGGG TGATTGGCAG CTGCTGGTGC TGTGGCTCCT GCTGCCGGGA
CCGGCACTGG GGATCTGGGC AATGAGCCGG GCACGGGCAG TGGATTATCA GACCCAGCGC
TGA
|
|---|
| Protein sequence | MSTHNKRWYL RHPVVVIVLA QLFGTSLWFS VNGVALSLER ETGLTDAGLG LLTVAVQAGF
ITGTLLLAIT GLADRFPASR LFAAAAVSGA VINAAFIPVA GDFSLAMALR FATGLCLAGI
YPLGMKLVVS WTPRHAGLAL GWLVGMLTLG TALPHLLRGA TLELPWQAPL LLASLLALFA
AVMVRALGDG PHLPATASGG RPWSGLAAFR RRPFRAAALG YFGHCWELYA FWTLAPLLVL
RELGRLDLSP QWMPWLAFGV IGIGALGCVL GGRLSRSQGS LRVARVALGV SGALCLIYPL
LGEAAPLLLL GLLFLWGLTV IADSPQFTTL ASLSAPRDRL GAALAMMNAV GFALTLPSIA
LVMHLWGDWQ LLVLWLLLPG PALGIWAMSR ARAVDYQTQR
|
|---|
| |