| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2525 |
|---|
| Symbol | |
|---|
| ID | 7317221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2668390 |
|---|
| End bp | 2669907 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643617428 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_002514589 |
|---|
| Protein GI | 220935690 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA TGGTCGCGTT GCCCGTCATG CTCCCGCTGA TCGCGGGTGC GGTGTCCCTG
GCCCTGTGGC GGTCGCGCTT AGCCCAGCGT TCCATCGGCG TGGTGGCCAA CCTGGCGCTC
ATGTGGGTGT CGGTGGAACT GCTGCTGCTC ACCTGGAACG AGGGCATCCA GGTCATGCAC
ATGGGCAGCT GGCCGGCGCC CTTCGGCATC GTGCTGGTCT CCGACATGCT GGGTGCCATC
ATGGTGGTGC TCACGGCCAT CATCGGCCTG GCCACCGCCG TGTACTCCCT CTCCGGGGTG
AGCCGGCGCC ATGAGCACTA CGGCTACTAC CCGCTCATGC ACCTGTTGCT AGCGGGCGTG
AACGGCGCCT TCCTCACCGG CGACATCTTC AACATGTACG TGTGGTTCGA GGTCATGCTG
GTGGCCTCCT TCGCCCTGCT GATCCTGGGC GGCGAGCGGG CGCAGATGGA AGGCGCCATC
AAGTACGTGA CCCTGAACCT GCTGTCCTCG GCCCTGTTCC TGTCGGGCAT CGGCCTGCTC
TACGGGCTGA CGGGCACCCT GAACATGGCG GACATCGCCG TGAAGCTTAA CGACCTGGAA
GACACCGGGC TGATCACCGT GATTGCGATG CTGTTCATGG TGTCCTTCGG CATCAAGGCC
TCCGCCTTCC CGTTCTTCTT CTGGCTGCCG GCCTCCTACC ACACGCCCCA GGTGGCGGTC
TCGGCCCTGT TCGCCGGCCT GCTCACCAAG GTGGGTGTGT ACGCCCTGTT CCGGGTGTTC
AGCCTGATCT TCGACCACGA CGTGGGCTAC ACCCACACGC TGTTGCTGTG GATGGCGGCA
CTCACCATGC TCACCGGCGT GCTGGGTGCG GCGGCGCAGT TCGAGTTCCG GCGCATCCTG
TCCTTCCACA TCATCAGCCA GATCGGCTAC ATGATCCTGG GCCTGGCCCT GTTCACGCCG
CTGGCCATCA TCGGCGGCGT GTTCTACCTG ATGCACCACA TCATCGTGAA GGCCAACCTG
TTCCTGGTCA GTGGTGTGGT GTTCCGGCTC AAGGGCACCC ATGAACTCAA GGACCTGGGC
GGGCTGTACC GCAGCCATCC CTGGCTGGGC GTGCTGTTCC TGATCCCGGC CCTGTCCCTG
GCCGGCCTGC CGCCCCTGTC CGGTTTCTTC GCCAAGTTCA TCCTGATCCG CGCCGGCGTG
GAGGTGGAGG CCTGGTGGAT CGTCGCCGTG GCCCTGGTGG TGGGTCTGCT GACCCTGTAT
TCCATGATCA AGATCTGGGC GGAGGTGTTC TGGAAGGCCC AGCCGGAAGG CGTCTCGCAC
CCGGTGGATC CCGCGGCCCA CCAGGGTGGC CTCTGGCTCA TGGTGCTGCC GATCGTCGGC
CTCGGTCTCA TGACCCTGTT CATCGGTCTC TGGGGTCAGC CCATCTACCT GCTGGCCGAG
CGGGCCGCGG TGGAGATGCT GGATTCGTCC CGCTATATCG ATGCGGTGCT GGGCTCGGCC
CAGGGGGTGC GGCCGTGA
|
|---|
| Protein sequence | MSTMVALPVM LPLIAGAVSL ALWRSRLAQR SIGVVANLAL MWVSVELLLL TWNEGIQVMH
MGSWPAPFGI VLVSDMLGAI MVVLTAIIGL ATAVYSLSGV SRRHEHYGYY PLMHLLLAGV
NGAFLTGDIF NMYVWFEVML VASFALLILG GERAQMEGAI KYVTLNLLSS ALFLSGIGLL
YGLTGTLNMA DIAVKLNDLE DTGLITVIAM LFMVSFGIKA SAFPFFFWLP ASYHTPQVAV
SALFAGLLTK VGVYALFRVF SLIFDHDVGY THTLLLWMAA LTMLTGVLGA AAQFEFRRIL
SFHIISQIGY MILGLALFTP LAIIGGVFYL MHHIIVKANL FLVSGVVFRL KGTHELKDLG
GLYRSHPWLG VLFLIPALSL AGLPPLSGFF AKFILIRAGV EVEAWWIVAV ALVVGLLTLY
SMIKIWAEVF WKAQPEGVSH PVDPAAHQGG LWLMVLPIVG LGLMTLFIGL WGQPIYLLAE
RAAVEMLDSS RYIDAVLGSA QGVRP
|
|---|
| |