Gene Tgr7_2404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_2404 
Symbol 
ID7317101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand+ 
Start bp2543525 
End bp2544175 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content63% 
IMG OID643617303 
ProductLytic transglycosylase catalytic 
Protein accessionYP_002514469 
Protein GI220935570 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACCAT TTCACAGAAC CTTCCTGAAC TGTGCGCTGA CCAGCGCCGT GTTTGTCGGC 
GCGGCTGCGC CAGCCGCGCT CATGGCGCAG GGCCAGATAC ATATCCATCG CAGCCCGGAC 
GGCACCCAGT GGTTCACCGA CCGGCGCAAC ATGGGGCCCG ACTATACCTA CGTGGGATCC 
TACGGGCGAC CGACCGCAAG TCACTCCTGT CATGGCATCA CGCCGACCAT CCTGGCGCAA 
AGGGCTGAAC CCTATCTCAC CACCGTGCGG CATTATGCTA CCCACTATGG CATCGATCCG 
AACCTGGTCC GTGCAGTCAT CACGGTGGAG TCCTGCTTCG ACCGCCAGGC GGTCTCCCGG 
GTCGGCGCCC AGGGGCTGAT GCAGCTGATG CCGGCGACTG CGCGGGAGCT GGGAGTGCAG 
AACAGCTTCG ATGCCCTCGA CAACATCCGG GGCGGTATTC GCTATCTGCA TCGGATGCTG 
CAGGAGTTTG ACCAGGACAT CACCCTGGCC CTGGCCGCCT ACAACGCTGG CCCTGGTGCA 
GTGCGCCGAC ACAACGGTGT CCCACCCTTC AACGAAACCC GCAATTACAT CACCCGCGTC 
ATGGATCACT ACGAACGACT GGCGGGTACG GCCCAGACCT CAACACCCTG A
 
Protein sequence
MSPFHRTFLN CALTSAVFVG AAAPAALMAQ GQIHIHRSPD GTQWFTDRRN MGPDYTYVGS 
YGRPTASHSC HGITPTILAQ RAEPYLTTVR HYATHYGIDP NLVRAVITVE SCFDRQAVSR 
VGAQGLMQLM PATARELGVQ NSFDALDNIR GGIRYLHRML QEFDQDITLA LAAYNAGPGA 
VRRHNGVPPF NETRNYITRV MDHYERLAGT AQTSTP