| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2393 |
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| Symbol | |
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| ID | 7317089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 2527846 |
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| End bp | 2530680 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643617291 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002514458 |
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| Protein GI | 220935559 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGAG ACATGATGCC CATGGTGTAT GGAAACGACG GATCGGCTGG TCGTACTCTG
CGTGCGTTCG TTGGGGCGAT ACTGCTTCTT GTGCTTGCAA ACCTGCTGGG TTGTTCCCCG
GGAGAGGACA GCGCCACTCG CCTGGAAAGG GCGCAAACGC TGGAGGCTGC GGGCGACGTG
CGAGCCGCCG CCTTTGAACT GCGGCGCATC CTTCAGGATG ATCCGGACCA TGCTCAGGCA
CGCTTTGGCC TAGGGCGCTT AAATGTCCTG GCCGCACGAG GCGACGCCGC ACAGCGTGAA
TTACGAAGGG CGCTGGAACT GGGTATTCCG GGCGATGAGG TGATGCCCTG GCTGATTGAC
GCACTCCTGA TCCAGGAGCG GTTTGCCGAT GCACTTTCAG AAGTTTCCTC CCTGCTCTCT
GCAGACAATG CATCTACCGC CCGATGGCTG TTGCGCCGGG TTGAGGCGAA CCTGGGTCTG
GGGCGATACG ATGAACTATC AACTGATCTG GACGCGATCG CCGATTACGG TGTCGAGCAG
GCCCGCGTGT GGATGGCTCA GGCCCAGTTC GCTAACCACC AAGGTGATTC TGCTGCCGCG
CTGAATCTGG CCCGCAAGGC CGCGCGGGCC GACCCCGATG ACCCGCGAAC CGCTTTCACG
CATGGCTGGC TTGCCCTGAG GCAGGCACTG TTCCAGGAAG CGGAATCAGC GTTGCTGGAA
TCCACGCGCG CTGCACGTGC TCGTGCCAAT GATTCTGATC TCACCCGTGC CAATCTGCTG
CTGGTTGAAG CCCGTTTGGG GCAGGGCAAG ACCTCAGAGG CCGAGGCGGT TATCGTTGAA
CTTGAGTCGC TGCTCGGTGA CATCCCTGAG CTCAGCTATC TGAAAGGTCT GGTTGCCTAT
CGTCAGGGTA ATTTTGGGGT GGCGCGGGAT TCGCTACGGG ATACGCTTCA ACGCAGGCCC
GAGCATCATC AGGCCAGGTT GCTTGCGGGA GGTACGGCCT TTGCGTTGAA TGAGTACGAA
GAGGCATCCC GTCAGTTGCG CCGCTATCTG GCCGTGGTGC CATCCAATGA CGCCGCCCGC
CGGTTGCTGG CTGCTGCTCA AGCCCGGCTG GGGCGTCACG GTGATGCCAT GGCCGTCCTT
GAGCCCTTGC GCGCGGGCGG TCAGGATGCC GAAAGTGTCG CATTGCTGGC CATGATTGGC
CGCTCCGCCA CGGTCTCAGG AGAATTTGAG ACAGCAGAAA GTGCCTTCAG GGAGGCATTG
GCCGCATCTC CGGGGGATCC AGCCTTGCGT GGGGACCTGG CGCGGCTGCA TGCCGCCCAG
GGTCGCTACG ATGAGGCGAT TGATCAGCTT TCCGCCCTGG TCAGGGAAGG GGATGCCGCC
GCAGAACTGT TCCTGGTGCG CACGCTGGTG GCCAGTGGCA ACGTGGCGCT GGCCTTGAGT
CAGGCGCGGG CCCTTGCGGA GCGCAGTCCT GACCGTCCCG AGTGGCACAC CTTGGTGGGC
CTGATTCAAT TACAGCAAGG TGAACGAACG CAAGGTCGAG CAAGCCTCAT CAATGCTTTG
AACGTGGATG ATGCATATCT TCCGGCCCTG CTCGCCTTGG GTCGCCTGGG GCTCGAAGAA
GGCAATCAGG CCTCTGCTGA GCGATACTTC AATGCGGTGC TGCGAATTGA GCCACGCCAT
GGTCTGGCCA TGCTCGGGCT TGCCGAGTCA GCCGTGCGGC GCGGTGATGT TTCCACGGCG
GAATCCTGGC TGCAACGGGC AGTCGAGGCC AATCCGGACG CTGTTCTGCC CCGGCTCTGG
TTAAGTCGTT TTCATGCGCA GTCAGGCAAT GCGGATGCTG CCATCAGCAC GGCCCGTGAG
GCCGTGGCTG CCTCACCCCG GGATCCACGC GCGCTTGGCC TGCTGGCCGA GTTGCAGGCT
CGAAACGGTG ATCTTGATGG CGCGGCGGAT ACCTATGGCA TGCTCATCAA TGTGGTTCCC
GATGATCTGA CCGGCCGGTT GGCCCTGGCA GGCATCGCGG CGCAGCAGGG CAGGGAGGGG
GAGGCTCGTC AGCACATCAA TGCCGCCCTT GAAGTGGCTC CACGGGATCT GCGTGTACTG
GAACAGGCTG GCAGGGTCGA GCTGATCCTG GGCCAGGTGG ATGCGAGCCT CGCCTATGCG
CGTCAGGCGC GCGAGTCCTA CCCGTCTTCC CCGGTCGGAT GGATGCTGGA GGCTGATGCC
CTTGTAAGTG CCGGGCGGCA TGAACAGGCA CGTGATGCTT ACGCCCGGGC CCATCGCGTC
TTGCCTGCCT CGCTGAGCGC CCGCCGTCTG GCGCAAATGG CGGAGCGCGC CGGTGACGAG
CGACAGGCGC TTGAGGTGCT GCAGGATTGG CTGGAAACGA GTCCACAAGA TGTTTCGGCC
ATGCTCAATC TTGCCATGCT GCACCAGCGA CATGGACGTC GCAACGAGGC GGAGGTGCTC
TATGGACAAG TGCTGACCTT TGACCCCGAT CAGGTGGCGG CCCTGAACAA TCTCGCCTGG
CTCTATCATG AGCGGCAGGA CAGCAGGGCA CTGGAAATGG CACGCAAGGC CTATGAGCTT
CAGCCGGGCG CTGCAACCTC GCACACCTAT GGCTGGATGC TGGTCGAAAG TGGTGATGTG
GCCAGTGGGC TGTCCCTGAT TGAATCGGCG GCAGAGGCGG CCCCGATTCC GGAGGTGAGA
TACCGCCTGG CAGTTGCTTT GACCCGGGCC GGAGATGACC CACGGGCACG CCAGGTGCTT
GGCCAGTTGC TGGGCGAACA CGCTCAATTC CAACAGCGCA CCGAGGCAGA GGCCCTTTAC
CGGAGTCTGC AGTAG
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| Protein sequence | MFRDMMPMVY GNDGSAGRTL RAFVGAILLL VLANLLGCSP GEDSATRLER AQTLEAAGDV
RAAAFELRRI LQDDPDHAQA RFGLGRLNVL AARGDAAQRE LRRALELGIP GDEVMPWLID
ALLIQERFAD ALSEVSSLLS ADNASTARWL LRRVEANLGL GRYDELSTDL DAIADYGVEQ
ARVWMAQAQF ANHQGDSAAA LNLARKAARA DPDDPRTAFT HGWLALRQAL FQEAESALLE
STRAARARAN DSDLTRANLL LVEARLGQGK TSEAEAVIVE LESLLGDIPE LSYLKGLVAY
RQGNFGVARD SLRDTLQRRP EHHQARLLAG GTAFALNEYE EASRQLRRYL AVVPSNDAAR
RLLAAAQARL GRHGDAMAVL EPLRAGGQDA ESVALLAMIG RSATVSGEFE TAESAFREAL
AASPGDPALR GDLARLHAAQ GRYDEAIDQL SALVREGDAA AELFLVRTLV ASGNVALALS
QARALAERSP DRPEWHTLVG LIQLQQGERT QGRASLINAL NVDDAYLPAL LALGRLGLEE
GNQASAERYF NAVLRIEPRH GLAMLGLAES AVRRGDVSTA ESWLQRAVEA NPDAVLPRLW
LSRFHAQSGN ADAAISTARE AVAASPRDPR ALGLLAELQA RNGDLDGAAD TYGMLINVVP
DDLTGRLALA GIAAQQGREG EARQHINAAL EVAPRDLRVL EQAGRVELIL GQVDASLAYA
RQARESYPSS PVGWMLEADA LVSAGRHEQA RDAYARAHRV LPASLSARRL AQMAERAGDE
RQALEVLQDW LETSPQDVSA MLNLAMLHQR HGRRNEAEVL YGQVLTFDPD QVAALNNLAW
LYHERQDSRA LEMARKAYEL QPGAATSHTY GWMLVESGDV ASGLSLIESA AEAAPIPEVR
YRLAVALTRA GDDPRARQVL GQLLGEHAQF QQRTEAEALY RSLQ
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