| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2330 |
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| Symbol | |
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| ID | 7318115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 2448593 |
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| End bp | 2452792 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643617226 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002514397 |
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| Protein GI | 220935498 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0558758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGACC TTCTCAATCT GTTGAAACAG CAGGGCCACG TGGAAGAGTT CGATGCCATC
CGCATCGGCC TGTCCTCGCC CGAGCTGATC CGTTCCTGGT CCTTCGGTGA AGTGAAGAAG
CCCGAAACCA TCAACTACCG GACCTTCAAG CCGGAGCGTG ATGGCCTGTT CTGTGCCAAG
ATCTTCGGAC CCATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGCGTCG TGTGCGAGAA GTGCGGCGTC GAGGTGACCC AGACCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAGCT GGCCAGCCCC GTGGCCCACA TCTGGTTCCT GAAGAGCCTG
CCGTCCCGCA TCGGCCTGCT CATGGACATG ACCCTGCGCG ACATCGAGCG CGTGCTGTAC
TTCGAGGCCT TCGTGGTCAT CGACCCGGGT CTGACCACCC TGGAGCGTGG CCAGCTGCTC
ACCGACGAGC AGTATCTGGA GGCCATCGAG GAGCACGGTG ACGAGTTCGA CGCCCGCATG
GGCGCCGAGG CGGTCTACGA GCTGCTCAAG TCCATCGACC TGCAGAGCGA GGCGGCCAAG
CTGCGCGCCG AGGTCAACGA GACCAGTTCC GACACCAAGA TCAAGCGCAT CGCCAAGCGC
CTGAAGCTGA TCGAGTCCTT CCTGGATTCC GGCAACAAGC CCGAGTGGAT GATCCTCAAG
GTCCTGCCCG TGCTGCCCCC GGACCTGCGT CCGCTGGTGC CCCTGGACGG CGGCCGTTTC
GCCACCTCGG ACCTGAACGA CCTGTACCGC AGGGTGATCA ACCGCAACAA CCGCCTCAAG
CGCCTGCTGG AGCTCAACGC CCCGGACATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAGTCCGTGG ACGCGCTGCT CGACAACGGC CGCCGCGGCC GTGCCATCAC CGGCACCAAC
AAGCGCCCGC TGAAGTCCCT GGCCGACATG ATCAAGGGCA AGCAGGGCCG TTTCCGCCAG
AACCTGCTGG GCAAGCGCGT GGACTACTCC GGTCGTTCCG TGATCGTGGT GGGCCCGACC
CTGCGCCTGC ACCAGTGCGG TCTGCCCAAG AAGATGGCCC TGGAGCTGTT CAAGCCCTTC
ATCTTCGGCA AGCTGCATCG CCGTGGCCTG GCCACCACCA TCAAGGCGGC CAAGAAGCTG
GTGGAGCGCG AAGGGCCGGA GGTCTGGGAC ATCCTGGAAG AGGTGATCCG CGAGCATCCC
GTGATGCTCA ACCGTGCGCC CACCCTGCAT CGCCTGGGTA TCCAGGCCTT CGAGCCGGTG
CTCATCGAGG GCAAGGCCAT TCAGCTGCAC CCGCTGGTGT GCGCCGCGTT CAACGCCGAC
TTCGACGGCG ACCAGATGGC CGTGCACGTG CCCCTGTCCC TGGAGGCGCA GCTGGAAGCC
CGCGCCCTGA TGATGTCCAC CAACAACATC CTGTCGCCGG CCCATGGTGA TCCCATCATC
GTGCCGTCCC AGGACATCGT GCTGGGCCTC TACTACATGT CCCGCGACCG GGTGAACGCC
AGGGGCGAGG GCATGCTGTT CACCGACGTG GACGAGGTGC ACCGCGCCTA CGAGACCGGC
CAGGCCGAGC TGCATGCCCG CGTCGAGGTG CGTATCCGCG AGGTGGTGCC CAATGACAAG
GGCGAGCTCG AGGCGCGCTT CAACCGCGTC AAGACCACCG TGGGCCGCGC GCTGCTGTCG
CGCATCCTGC CCGAGGGCCT GCCCTTCGAG CTGGTCAACC GCGATCTGAA CAAGAAGGCC
ATCTCCGGGC TGATCAACGC CTGCTACCGC CGCGTGGGTC TGAAGGAGAC GGTGATCTTC
GCCGACCAGC TCATGTACAC GGGCTTCAAG TACTCCACCC GTGCCGGCGT GTCCTTCGGC
ATCAACGACA TGGTCATCCC CGACGAGAAG ACCGGGATCC TGGCCCATGC CGAGTCCCAG
GTGAAGGAGA TCGAGGACCA GTACTCCTCC GGTCTGGTCA CCAAGGGCGA GCGCTACAAC
AAGGTGGTGG ACATCTGGTC GCACACCAAC GATCAGGTGG CCAAGGCCAT GATGGAGAAG
CTCGGCAAGG AGGAGGTCAC CGACGCCGAG GGCAAGACCG TCAAGCAGCC GTCCTTCAAC
TCCATCTTCA TGATGGCCGA CTCCGGTGCC CGAGGCTCCG CCGCCCAGAT CCGCCAGCTG
GCGGGCATGC GCGGCCTGAT GGCCAAGCCG GACGGCTCCA TCATCGAGAC CCCCATCACG
GCGAACTTCC GTGAGGGTCT GAACGTGTTG CAGTACTTCA TCTCCACCCA CGGCGCCCGT
AAGGGTCTGG CGGATACCGC GCTCAAGACC GCCAACTCCG GTTACCTGAC CCGCCGTCTG
GTGGACGTGG CCCAGGACCT GGTGGTCACC GAGGTGGATT GCGGTACCGA TCAGGGCATC
GTCCTCAAGC CCATCATCGA GGGTGGCGAC GTGGTCGAGC CCCTGCGCGA GCGGGTGCTG
GGCCGTGTGC TGGCCCAGGA CATCGAGATG GCCGACGGTT CCACCCTGCT GCCCGCCGGC
ACCCTGCTGG ACGAGGACGC CGTGGACCTC ATGGAGGCCT CCGGCGTGGA CGAGGTGGTG
GTGCGGTCCG CCATCTCCTG CCAGACCCGT CACGGCATTT GCGCCATGTG CTACGGCCGC
GACCTGGCCC GTGGCCATCA GGTCAACGAG GGCGAGGCGG TGGGCGTCAT TGCCGCCCAG
TCCATCGGTG AGCCCGGCAC CCAGCTGACC ATGCGTACCT TCCACATCGG TGGTGCGGCC
AGCCGTTCCG TGGCCATCAG CGCCATCTCC GTGAAGGCCA AGGGCACGAT CCGTCTGCAC
AACATCAAGA CGGTGACCAA CAAGCAGGGC AACCTGGTGG CCGTGTCCCG TTCCGGTGAG
CTGGGCGTGA TCGACGAGCA GGGCCGCGAG CGCGAGCGTT ACAAGGTGCC CTACGGCGCG
GTGATCTCGG TCAACGAGGG CGATGCCGTC GAGGCCGGCC AGGAAGTGGC CACCTGGGAT
CCGCACACCC ACCCGATCAT CACCGAGGTG GCGGGCCGCA TCCAGCTGCA CGACTTCATC
GAGGGTGTGA CCGTCAACAA GCAGGTGGAC GAGATCACCG GCCTGTCCTC CACCGTGGTC
ATGGATCCCA AGTCCCGCGG CTCCGCCGGC AAGGACCTGC GTCCCATGGT CAAGCTGCTG
GACGAGAAGG GCAAGGACCT GATGCTGGCG GGTACCGAGA TCCCGGCCCA CTACGTGCTG
CCCACCGGGG CGATCATGAG CCTCGAGGAC GGCTCCACCG TGGCGGTGGG CGACGTGGTT
GCCCGTATCC CCCAGGAGTC CTCCAAGACC CGCGACATCA CGGGTGGTCT GCCCCGCGTG
GCCGACCTGT TCGAGGCCCG CAAGCCCAAG GAGCCTGCGA TCCTCGCGGA GCGCACCGGT
ACCGTCAGCT TCGGCAAGGA CACCAAGGGC AAGCAGCGCC TGATCATCAC CGACGAGAAC
GGTGACACCC ACGAGGAGCT GATTCCGAAG TGGCGCCACG TGAACGTCTT CGAGGGCGAG
CACGTGGAGC GGGGCGAAGT GATCGCCGAT GGCGAACCGA ACCCCCACGA CATCCTGCGT
CTGCTGGGCG TCACCGCCCT GGCCGAGTAC ATGGTCAAGG AGATCCAGGA CGTCTACCGC
CTGCAGGGTG TGAAGATCAA CGACAAGCAC ATCGAGGTGA TCGTGCGCCA GATGCTGCGC
AAGGTGGAGA TCACCGATGC CGGCGAGACC CGCTTCCTCA CCGGGGAGCA GGTGGACCGT
GCCCGGGTCC TGGAAGAGCA CGAGCGCCTG GGTCCCGACA AGGAACGGGC CAAGTACGAG
CGGGTGCTGC TGGGCATCAC CAAGGCCTCC CTGGTGACCG AGTCGTTCAT CTCGGCGGCC
TCCTTCCAGG AGACCACCCG GGTGCTCACC GAGTCGGCCA CCCGGGGCGC CCGTGACGAC
CTGCGGGGCC TGAAGGAGAA CGTGATCGTG GGCCGGCTGA TCCCGGCCGG TACCGGTCTG
GCGTACCACA AGGACCGCCG CCGCAAGCGC CATGCCGGGG GCCTGTCCCT GATGGTGCCG
GAGGCCCCGG AGGCAGTCGA GACCGATTCG GGTATGGAGA CCCAGACCCC CGCGGAGTGA
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| Protein sequence | MKDLLNLLKQ QGHVEEFDAI RIGLSSPELI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVVCEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FEAFVVIDPG LTTLERGQLL TDEQYLEAIE EHGDEFDARM
GAEAVYELLK SIDLQSEAAK LRAEVNETSS DTKIKRIAKR LKLIESFLDS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELNAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPT
LRLHQCGLPK KMALELFKPF IFGKLHRRGL ATTIKAAKKL VEREGPEVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQLEA
RALMMSTNNI LSPAHGDPII VPSQDIVLGL YYMSRDRVNA RGEGMLFTDV DEVHRAYETG
QAELHARVEV RIREVVPNDK GELEARFNRV KTTVGRALLS RILPEGLPFE LVNRDLNKKA
ISGLINACYR RVGLKETVIF ADQLMYTGFK YSTRAGVSFG INDMVIPDEK TGILAHAESQ
VKEIEDQYSS GLVTKGERYN KVVDIWSHTN DQVAKAMMEK LGKEEVTDAE GKTVKQPSFN
SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EVDCGTDQGI VLKPIIEGGD VVEPLRERVL
GRVLAQDIEM ADGSTLLPAG TLLDEDAVDL MEASGVDEVV VRSAISCQTR HGICAMCYGR
DLARGHQVNE GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRSVAISAIS VKAKGTIRLH
NIKTVTNKQG NLVAVSRSGE LGVIDEQGRE RERYKVPYGA VISVNEGDAV EAGQEVATWD
PHTHPIITEV AGRIQLHDFI EGVTVNKQVD EITGLSSTVV MDPKSRGSAG KDLRPMVKLL
DEKGKDLMLA GTEIPAHYVL PTGAIMSLED GSTVAVGDVV ARIPQESSKT RDITGGLPRV
ADLFEARKPK EPAILAERTG TVSFGKDTKG KQRLIITDEN GDTHEELIPK WRHVNVFEGE
HVERGEVIAD GEPNPHDILR LLGVTALAEY MVKEIQDVYR LQGVKINDKH IEVIVRQMLR
KVEITDAGET RFLTGEQVDR ARVLEEHERL GPDKERAKYE RVLLGITKAS LVTESFISAA
SFQETTRVLT ESATRGARDD LRGLKENVIV GRLIPAGTGL AYHKDRRRKR HAGGLSLMVP
EAPEAVETDS GMETQTPAE
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