| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2153 |
|---|
| Symbol | |
|---|
| ID | 7318257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2282452 |
|---|
| End bp | 2284002 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643617048 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_002514220 |
|---|
| Protein GI | 220935321 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCA GCGACAAGCT CATCATTTTC GACACCACCT TGCGCGACGG CGAGCAGAGT
CCCGGCGCGT CCATGACCCG CGAGGAGAAG GTGCGCATCG CCAAGGCCCT GGAGAAGATG
CGCGTGGACG TCATCGAGGC GGGCTTCCCC ATCGCCAGCC CCGGCGACTT CGAGTCCGTG
CAGGCGGTGG CCCGCGCGGT GAAGGATTCC ACCGTGTGCG GTCTGGCCCG GGCCAAGGAC
AGCGACATCG ACCGGGCCGG CGAGGCCCTG AAGGACGCCG CCTCCGCACG CATCCACACC
TTCATCGCCA CCTCGCCCAT CCACATGCAG CACAAGCTGC GCATGAGCCC GGACCAGGTG
CTGGAGCAGG CGGTCAAGGC GGTCAAGCGC GCCCGCCAGC ACACCGACAA CGTGGAGTTC
TCCGCCGAGG ACGCCGGGCG TTCCGAGCTG GACTTCCTGT GCCGGGTGAT CGAGGCGGTG
ATCGACGCCG GCGCCCGCAC CATCAACATC CCCGACACCG TGGGCTACAA CATCCCCCAG
CAGTTCGGCG AGTTGATCAA GAATCTCATC GAGCGGGTGC CCAACTCCGA CAAGGCGGTG
TTCTCCGTGC ACTGCCACAA CGACCTGGGC CTGGCCGTGG CCAACTCCCT GTCCGCGGTG
CTCAACGGCG CCCGGCAGGT GGAGTGCACC ATCAACGGCC TGGGCGAGCG GGCGGGCAAT
GCTTCGCTCG AGGAGATCGT CATGGCGGTG CGCACCCGCC AGGACGTGTT CTCCTGCAAC
ACGACGCTCG ACACCACCCA GATCGTGCCC TGCTCGCGCC TGGTCTCCGG CATCACCGGT
TTCCCGGTGC AGCCCAACAA GGCCATCGTG GGGGCGAACG CCTTCGCCCA TGAGTCCGGC
ATCCACCAGG ACGGCGTGCT CAAGCACCGC GACACCTACG AAATCATGCG CGCCCAGGAC
GTGGGCTGGT CCGACAACCG CATCGTGCTG GGCAAGCACT CCGGCCGCAA CGCCTTCAAG
ACCCGACTCA AGGACCTGGG CATCGAGTTC GAGTCCGAGG AGGAGTTGAA CGAGGCCTTC
GCCCGGTTCA AGGATCTGGC CGACCGCAAG CACGAGATCT TTGATGAGGA TCTCCAGGCC
CTGGTGACCG AGACCGCCAC CGCCATGGAG GACGAGACCT ACAAGCTGGT GGCGCTCAAG
GTCTGTTCCG AGACCGGCGA GACTCCGGTG GCCTCGGTGA CCCTGAACGT CAATGGCGAG
GAGAAGAGCG GCACTGCCGA GGGCGGTGGC CCCGTGGATG CGGCCTTCAA GGCCATCGAA
TCCATCGCGC CGAGCGGCAC CGAGCTGCAG CTCTATTCGG TGAACAACAT CACCAGCGGC
ACCGACGCCC AGGGCGAGGT GACCGTGCGC CTGGAGAAGG CGGGCCGGGT GGTCAACGGC
CAGGGTGCCG ATACGGACAT CGTCATCGCC TCGGCCAAGG CCTATCTCAA TGCCCTTAAC
CGGCTGACCA ATCCTCCCGG CCGGGCCCAT CCCCAGCGTG GCGACGTCTG A
|
|---|
| Protein sequence | MSGSDKLIIF DTTLRDGEQS PGASMTREEK VRIAKALEKM RVDVIEAGFP IASPGDFESV
QAVARAVKDS TVCGLARAKD SDIDRAGEAL KDAASARIHT FIATSPIHMQ HKLRMSPDQV
LEQAVKAVKR ARQHTDNVEF SAEDAGRSEL DFLCRVIEAV IDAGARTINI PDTVGYNIPQ
QFGELIKNLI ERVPNSDKAV FSVHCHNDLG LAVANSLSAV LNGARQVECT INGLGERAGN
ASLEEIVMAV RTRQDVFSCN TTLDTTQIVP CSRLVSGITG FPVQPNKAIV GANAFAHESG
IHQDGVLKHR DTYEIMRAQD VGWSDNRIVL GKHSGRNAFK TRLKDLGIEF ESEEELNEAF
ARFKDLADRK HEIFDEDLQA LVTETATAME DETYKLVALK VCSETGETPV ASVTLNVNGE
EKSGTAEGGG PVDAAFKAIE SIAPSGTELQ LYSVNNITSG TDAQGEVTVR LEKAGRVVNG
QGADTDIVIA SAKAYLNALN RLTNPPGRAH PQRGDV
|
|---|
| |