Gene Tgr7_2066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_2066 
SymbolsecD 
ID7316455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp2192384 
End bp2194255 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content66% 
IMG OID643616958 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002514133 
Protein GI220935234 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.666611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAACC AGTACCCCCT GTGGAAATAC CTGCTCATCG TCGTGGTCGT GGCGGTGGGT 
GCCCTGTATG CCATGCCGAA CCTCTACCCG GAGGATCCGG CGGTGCAGAT CTCCAACACC
ACCACCGACG AGGTGGATGA GGCCACCCGT CGACAGGTGG AGGCGGTGCT GGCGGGGCGG
GGGCTGAACC CCAAGACCGG GGTGGAGTAC GACGGTCAGC ACGTGCTGCT GCGCTTCGAT
AACACCGATG ACCAGCTGCA GGCCGCGGAT ATCCTGCGCA CCGCGCTCAT GGGCACCCAG
AACGTGGTGG CCCTGAACCT GGCGCCGGCC ACGCCCGACT GGCTGCGGAC CTTCAACGCC
CGGCCCATGT CCCTGGGCCT GGACCTGCGC GGCGGTGTGC ACTTCCTCAT GGAAGTGGAC
ATGGCGGCGG TGGTCACCGC CTCCCATGAA CGCTACGTAG GCGAGTTCCG CAGCCTGCTG
CGAGACGAGC GCATCCGGTA CCTGTCCGTG GAGCGGGCCA GCGAGGGCGT GGTGGTGCGT
TTCCGCGATG CCGCCGAACG GGATCAGGCC GGTGATTTCC TGCGCCGGGA GTACCGGGGC
GACCTGGACT TCCGTAGCGA TCAGGCCGGC GAAGTGTTCC TGCTCATCGC CAGTCTGACC
CAGGACACCC TCACGGACCA GCGCCGCCTG GCCCTGCAGC AGAACATCAC CACCCTGCGC
AACCGCGTGA ACGAGTTGGG CGTGGCCGAG CCCATCATCC AGCAGCAGGG TGAGGATCGT
ATCGTCGTGC AGTTGCCCGG CGTGCAGGAC ACCGCGCGTG CCAAGGAGAT CCTGGGCGCC
ACCGCCACCC TGGAATTCCG CCTGGTGGAC GAGGAGAACG ACCCCTTCGA GGCCGCCGCC
ACCGGACGCG TGCCCTCCGC CTCGCGCCTG TACCGGGAGC GCAACGGCAA CCCGGTGCTG
CTGCGCCGCC AGGTGATGCT CACCGGCGAT TACATCGTTG ATGCCGCTTC CGGTATCGCC
CAGGACAGTG GCGGCCCTGC GGTGTTCATC AACCTGGATG CCCAGGGTGC GCGCATCTTC
AGCCGGGTGA CCGGCGAGAA CATCGGCCGC CTGATGGGCA CGGTGTTCAT CGAGACCAAG
ACCGAGACGG TGGAGGAAAA CGGCGAGATG GTGCGCCGTA CCACCCGCAC CGAGGAGGTC
ATCAACGTGG CGCGCATCCA GGATCAACTG GGACGGCGCT TCCAGATCAC AGGCCTTGAG
AGCACCCGCG AGGCCCGCAA CCTGGCCCTG CTGCTGCGTG CCGGTGCCCT GGCCGCGCCC
ATGACCATCG TCGAGGAGCG CACCGTGGGC CCGAGCCTGG GTCGCGACAA CATCGAGCGC
GGTTTTAACT CCGTGGTGAT CGGCTTCATC CTGGTGCTGA TCTTCATGGC GCTCTACTAC
CGGGTGTTCG GCCTGGTGGC CAACGTGGCC CTGGCGCTCA ACCTGGTGCT GATCGTCTCG
GTGCTATCCA TGCTGCAGGC GACCCTGACC CTGCCGGGCA TCGCCGGTAT CGTGCTCACC
GTGGGCATGG CAGTGGATGC CAACGTACTG ATCTTCGAAC GTATCCGTGA AGAGCTGCGT
AACGGCAACT CGCCCCAGGC GGCTATCGCT TCCGGTTACG ACCGCGCCTT CTCCACCATC
GTGGATGCCA ACATCACCAC CCTGATCGCG GCCCTGGTGC TGTTCATGTT CGGTACTGGC
CCCATCAAGG GCTTCGCCAT CACCCTGTCC ATCGGTATCG TGATCTCCAT GTTCACGGCC
ATCCTGGTCA CACGGGCCAT CATCAACCTC ATCTATGGTC GCCGGCGCCG CATCAAGGCG
CTGGCCATCT GA
 
Protein sequence
MINQYPLWKY LLIVVVVAVG ALYAMPNLYP EDPAVQISNT TTDEVDEATR RQVEAVLAGR 
GLNPKTGVEY DGQHVLLRFD NTDDQLQAAD ILRTALMGTQ NVVALNLAPA TPDWLRTFNA
RPMSLGLDLR GGVHFLMEVD MAAVVTASHE RYVGEFRSLL RDERIRYLSV ERASEGVVVR
FRDAAERDQA GDFLRREYRG DLDFRSDQAG EVFLLIASLT QDTLTDQRRL ALQQNITTLR
NRVNELGVAE PIIQQQGEDR IVVQLPGVQD TARAKEILGA TATLEFRLVD EENDPFEAAA
TGRVPSASRL YRERNGNPVL LRRQVMLTGD YIVDAASGIA QDSGGPAVFI NLDAQGARIF
SRVTGENIGR LMGTVFIETK TETVEENGEM VRRTTRTEEV INVARIQDQL GRRFQITGLE
STREARNLAL LLRAGALAAP MTIVEERTVG PSLGRDNIER GFNSVVIGFI LVLIFMALYY
RVFGLVANVA LALNLVLIVS VLSMLQATLT LPGIAGIVLT VGMAVDANVL IFERIREELR
NGNSPQAAIA SGYDRAFSTI VDANITTLIA ALVLFMFGTG PIKGFAITLS IGIVISMFTA
ILVTRAIINL IYGRRRRIKA LAI