Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_2066 |
Symbol | secD |
ID | 7316455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 2192384 |
End bp | 2194255 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643616958 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002514133 |
Protein GI | 220935234 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.666611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAACC AGTACCCCCT GTGGAAATAC CTGCTCATCG TCGTGGTCGT GGCGGTGGGT GCCCTGTATG CCATGCCGAA CCTCTACCCG GAGGATCCGG CGGTGCAGAT CTCCAACACC ACCACCGACG AGGTGGATGA GGCCACCCGT CGACAGGTGG AGGCGGTGCT GGCGGGGCGG GGGCTGAACC CCAAGACCGG GGTGGAGTAC GACGGTCAGC ACGTGCTGCT GCGCTTCGAT AACACCGATG ACCAGCTGCA GGCCGCGGAT ATCCTGCGCA CCGCGCTCAT GGGCACCCAG AACGTGGTGG CCCTGAACCT GGCGCCGGCC ACGCCCGACT GGCTGCGGAC CTTCAACGCC CGGCCCATGT CCCTGGGCCT GGACCTGCGC GGCGGTGTGC ACTTCCTCAT GGAAGTGGAC ATGGCGGCGG TGGTCACCGC CTCCCATGAA CGCTACGTAG GCGAGTTCCG CAGCCTGCTG CGAGACGAGC GCATCCGGTA CCTGTCCGTG GAGCGGGCCA GCGAGGGCGT GGTGGTGCGT TTCCGCGATG CCGCCGAACG GGATCAGGCC GGTGATTTCC TGCGCCGGGA GTACCGGGGC GACCTGGACT TCCGTAGCGA TCAGGCCGGC GAAGTGTTCC TGCTCATCGC CAGTCTGACC CAGGACACCC TCACGGACCA GCGCCGCCTG GCCCTGCAGC AGAACATCAC CACCCTGCGC AACCGCGTGA ACGAGTTGGG CGTGGCCGAG CCCATCATCC AGCAGCAGGG TGAGGATCGT ATCGTCGTGC AGTTGCCCGG CGTGCAGGAC ACCGCGCGTG CCAAGGAGAT CCTGGGCGCC ACCGCCACCC TGGAATTCCG CCTGGTGGAC GAGGAGAACG ACCCCTTCGA GGCCGCCGCC ACCGGACGCG TGCCCTCCGC CTCGCGCCTG TACCGGGAGC GCAACGGCAA CCCGGTGCTG CTGCGCCGCC AGGTGATGCT CACCGGCGAT TACATCGTTG ATGCCGCTTC CGGTATCGCC CAGGACAGTG GCGGCCCTGC GGTGTTCATC AACCTGGATG CCCAGGGTGC GCGCATCTTC AGCCGGGTGA CCGGCGAGAA CATCGGCCGC CTGATGGGCA CGGTGTTCAT CGAGACCAAG ACCGAGACGG TGGAGGAAAA CGGCGAGATG GTGCGCCGTA CCACCCGCAC CGAGGAGGTC ATCAACGTGG CGCGCATCCA GGATCAACTG GGACGGCGCT TCCAGATCAC AGGCCTTGAG AGCACCCGCG AGGCCCGCAA CCTGGCCCTG CTGCTGCGTG CCGGTGCCCT GGCCGCGCCC ATGACCATCG TCGAGGAGCG CACCGTGGGC CCGAGCCTGG GTCGCGACAA CATCGAGCGC GGTTTTAACT CCGTGGTGAT CGGCTTCATC CTGGTGCTGA TCTTCATGGC GCTCTACTAC CGGGTGTTCG GCCTGGTGGC CAACGTGGCC CTGGCGCTCA ACCTGGTGCT GATCGTCTCG GTGCTATCCA TGCTGCAGGC GACCCTGACC CTGCCGGGCA TCGCCGGTAT CGTGCTCACC GTGGGCATGG CAGTGGATGC CAACGTACTG ATCTTCGAAC GTATCCGTGA AGAGCTGCGT AACGGCAACT CGCCCCAGGC GGCTATCGCT TCCGGTTACG ACCGCGCCTT CTCCACCATC GTGGATGCCA ACATCACCAC CCTGATCGCG GCCCTGGTGC TGTTCATGTT CGGTACTGGC CCCATCAAGG GCTTCGCCAT CACCCTGTCC ATCGGTATCG TGATCTCCAT GTTCACGGCC ATCCTGGTCA CACGGGCCAT CATCAACCTC ATCTATGGTC GCCGGCGCCG CATCAAGGCG CTGGCCATCT GA
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Protein sequence | MINQYPLWKY LLIVVVVAVG ALYAMPNLYP EDPAVQISNT TTDEVDEATR RQVEAVLAGR GLNPKTGVEY DGQHVLLRFD NTDDQLQAAD ILRTALMGTQ NVVALNLAPA TPDWLRTFNA RPMSLGLDLR GGVHFLMEVD MAAVVTASHE RYVGEFRSLL RDERIRYLSV ERASEGVVVR FRDAAERDQA GDFLRREYRG DLDFRSDQAG EVFLLIASLT QDTLTDQRRL ALQQNITTLR NRVNELGVAE PIIQQQGEDR IVVQLPGVQD TARAKEILGA TATLEFRLVD EENDPFEAAA TGRVPSASRL YRERNGNPVL LRRQVMLTGD YIVDAASGIA QDSGGPAVFI NLDAQGARIF SRVTGENIGR LMGTVFIETK TETVEENGEM VRRTTRTEEV INVARIQDQL GRRFQITGLE STREARNLAL LLRAGALAAP MTIVEERTVG PSLGRDNIER GFNSVVIGFI LVLIFMALYY RVFGLVANVA LALNLVLIVS VLSMLQATLT LPGIAGIVLT VGMAVDANVL IFERIREELR NGNSPQAAIA SGYDRAFSTI VDANITTLIA ALVLFMFGTG PIKGFAITLS IGIVISMFTA ILVTRAIINL IYGRRRRIKA LAI
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