| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1991 |
|---|
| Symbol | |
|---|
| ID | 7316380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2110463 |
|---|
| End bp | 2111161 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643616884 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_002514059 |
|---|
| Protein GI | 220935160 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC GCTGCATCAC CTTCGACCTC GATGACACCC TCTGGGACTG CGCCCCGGTG
ATCGAGGGGG CCGAGAGCCG CTTCTATCAC TGGCTCGCGG AACACTACCC GCGCATCCCT
GAACGGTTCA GCCCGCAGGC GCTCATCGAG CACCGCAAGG ACTGGTTCGG CCGGTATCCG
GATCTGCACC ATGACATGAC CCGCCTGCGC AAGCGCTGGC TGAGCGTGCT GGCACGGGAG
AACGGCTATG ACGAATCACT GGTGGAACCC GGTTTCCGGG TATTCTGGGA GGCGCGCAAC
CAGGTGTGTC TCTACGACGA CGTGCTGGAG ACCCTGGAGC GCCTGCACGG CCGCTACCTG
CTCGGCAGCA TCACCAACGG CAACGCCGAC GTGCACCACA TCGGCATCGG TCACTTATTC
GACTTCTCCA TCACCGCCGC CGGCGCGGGC GTGGCCAAAC CCCATCCGGC CATCTTCACG
GCGGCGCTCG ACGAGGCCGG CGTCGCGGCC CACGAGGCCC TGCACGTGGG CGACGACCCG
CAGCGGGATG TGATCGGCGC GGCCCGGGTG GGACTCAGGA CGCTGTGGGT CAACCCGCAG
GATCTGCCGG CACCGGAGGG CTGCCGGCCG GATGGGGTGG TCAGACGGGT GGGGGAGATA
CCGGGGTGGG TCGAGGGATG GGTTAGAAGT GAGAAGTGA
|
|---|
| Protein sequence | MTIRCITFDL DDTLWDCAPV IEGAESRFYH WLAEHYPRIP ERFSPQALIE HRKDWFGRYP
DLHHDMTRLR KRWLSVLARE NGYDESLVEP GFRVFWEARN QVCLYDDVLE TLERLHGRYL
LGSITNGNAD VHHIGIGHLF DFSITAAGAG VAKPHPAIFT AALDEAGVAA HEALHVGDDP
QRDVIGAARV GLRTLWVNPQ DLPAPEGCRP DGVVRRVGEI PGWVEGWVRS EK
|
|---|
| |