| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1990 |
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| Symbol | |
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| ID | 7316379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 2107568 |
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| End bp | 2110444 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643616883 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002514058 |
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| Protein GI | 220935159 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTGC GCTACCTGAT CCCCGTGCTT CTGCTGGGTC TGGCCCTGGT GGCCGGACTG
TTCTCCTACC AGAGCGGCAC CCGCGCGGCT CTGGCGCAGG TGCAGGCCAG CGAGACGGAT
AACCTGCGCC GGCTGATGAA CCGGCTGCAG GAAAACCTGG AATACCTGCT GCGCCATGAC
GGGATGCAGC GGGTCCAGGA GGAGATGGCG GCGCTGAGCG TCGAACCACA CCTGAATCTC
GCCCTGGTGG CCGACCCCCA GGGGCAGGTG CTTGGCTCCA TGCATCGGGC GGACCAGGTC
CGCAAGGCGG CCGAACTGCT GGAGGAACGG CTGCTGTCCC AGTGGCAGGA CGAGGCAGTG
GAGTGGCTCA AGGCACCTGA CAGGATCACC TCCGGTACGG TTCAGATCTC CAGGGATGGG
ACGACCCTGC TAGGGCTCTA TCCCCTGGTG CTCGGCAGCG AGCCCGGCGA GCTGCGACCC
AGCCAGGTGG GACTGCTGGT GGTGCAGGCG GACCTGGGCC GTTTCCAGCA GATGGCTCGG
CACCTGGTGG AACGGCAAAC CCTGACCTTC GTGGGTGTAC TGCTGCTGGT GGCGCTGCTG
GGCTGGTTCC TCAGCCACCG GCTGGTCACC CGCCGCATGG ACCGCCTGCT GCAGACCACA
CGGCGGCTCG GGCAAGGCGA TCTGGATGCC CGCACCTGGC TGAGCGGTCG TGACGAACTG
GCCCGGCTGG GCCAGGACTT CGACCGCATG GCTGAACAGA TCCAGGCCGC GCGCAAGGCC
CTAGAGGACA ACGCCGAGCG ACTGGAGCGG GCCCAGGCCA TGGGCCAGAT GGGCGACTGG
GAATGGGATG TTCAGACCGG CACGCTACAC TGGTCACCCC AGCTCTATTG CATCTTCGGG
GTGTCACCCG AGAGCTTCAC GCCCAGCTAT GACGGCTACC TGGACCTCGT GCACCCCGAG
GACCGGCCGG CCCTGCTGGC GACGGTGGAG GCCGCGCGCA GCAGCGGCGA GCCCTACACC
CTGGACCACC GCATCGTGCG ACCCGATGGC AGCATCCGGG TAATCCAGTC CCAGGGAGAG
GCACTGCGCG ATGCCGACGG TCGCATCATC AAGCTGCGCG GCACGGGTCT CGATGTGACC
GAGCGCAAGC AGGCCGAGGC TGCCCTGTTC GAAGCCAAGG AACGGGCCCT GGTGACCCTG
CATTCCATCG GCGACGCAGT GATTACCACC GATGCCCAGG GTATCGTCAC GTACCTCAAC
CCGGTCGCGG AAGGCCTCAC CGGCTGGCGC AGCTCAGAGG CCACCGGCCA GCCCCTGACT
AAGGTGTTCC GCATCTTCAA CGAGTTCACC CTGCAGCCCA CCCAGGACCC GGTGAAGACC
TGTCTCGAGG AAGGACGCAT CGTGGCCCTG GCCAACCACA CGGTGCTCAT GAGCCGGGAC
GGCGCCACCC GGGCCATCGA GGATTCCGCC GCCCCCATCC GCGACCGCAA CGGGCTGATC
CTGGGCGTGG TGCTGGTGTT CCACGACGTG AGCAAGACCC GGCAGATGGC CCGCCAGCTC
TCCTGGCAGG CCACCCACGA CGCGCTCACC GGCCTGTTCA ACCGCTACGA ATTCGAGCAG
CGTCTTGCCC AGGCCCTGGC CCAGGCGAGG GATCGTCTGG CCCATCACGC CGTGCTGTAC
ATGGACCTGG ACCAGTTCAA GGTGGTCAAC GACACCTGCG GCCACAGCGC GGGCGATGAA
CTGCTCAAAC AGCTCGCCTA CCTGCTCATG GGCAAGGTGC GTGAGAGCGA CACCCTGGCG
CGACTGGGTG GCGATGAGTT CGGTGTGCTG CTGGAGAACT GTCCCCTGGA CAAGGCCCGG
GAGATCGCCC AGGAACTGCG TCAGACGGTG CGCGATTTCC GTTTCAGCTG GAAGGGCAAG
AGCTTCCAGA TCGGCATCAG CATCGGGCTG GTGATGATCA GCGACGGCAA CCTGGATCTT
GCCGAGGTCT TGAGCGCCGC CGACATGGCC TGCTATGCGG CCAAGGACCT GGGGCGCGAC
CGCATCCACG TCTACCACGC CGAGGACGCC GACCTGCAGC GACGCCACGT GGAGATGCAG
GCCATCAACC GCATCACCGA TGCCCTCACC CATGACCGCT TCGTCCTCTA CACCCAGCGC
ATCGTCGCCA CCGGCGCGGC GGGCCCCGAC GACGGCGGCG AGCACATGGA GATCCTGCTG
CGCATGGTGG ACGAGAAGGG CGACCTGGTG CCGCCCGGTG CCTTCATCCC TGCCGCGGAA
CGCTACGACC TCATGCCCGC CATCGACCGC TGGGTGATCC GGCGCTTCTT CAGCACCATG
GCACAGCACA TCCGTGAAGA ATGCGGCGTG GATGGCTCCG GGGGCAGCGC CTCAGGCTGC
CTGTATGCCA TCAACATCTC CGGCGCCTCC ATCAACGACG AGACCTTCCT GGGATTTGTC
ACCGAGCAGC TGGAGACGCA CCGCATCCCC CCCACGGCCA TCTGCTTCGA GATCACCGAA
ACGGCCGCCA TCGCCAACCT CACCCGCGCC ATGAACCTGA TCAACGAATT GCGCAAACGG
GGCTGTCGCT TCTCCCTGGA CGACTTCGGT ACCGGCGTGT CCTCGTTCGG CTACCTGAAG
AACCTGCCGG TGGATTACCT GAAGATCGAC GGCAGCCTGG TCAAGGACAT CGTTTCGGAT
CCCATCGACC GGGCCATGGT GGATGCCATC AACCGCATCG GCCAGGTGAT GGGCATCCAC
ACCGTGGCCG AGTTCGTGGA GAACGACGAG ATCCTGGCAA GCCTTCGGGA ACTGGGCGTC
GATTATGCCC AGGGATACGG CATCGACCGG CCGAAACCGC TCTTGCGTGA AGGGTGA
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| Protein sequence | MPLRYLIPVL LLGLALVAGL FSYQSGTRAA LAQVQASETD NLRRLMNRLQ ENLEYLLRHD
GMQRVQEEMA ALSVEPHLNL ALVADPQGQV LGSMHRADQV RKAAELLEER LLSQWQDEAV
EWLKAPDRIT SGTVQISRDG TTLLGLYPLV LGSEPGELRP SQVGLLVVQA DLGRFQQMAR
HLVERQTLTF VGVLLLVALL GWFLSHRLVT RRMDRLLQTT RRLGQGDLDA RTWLSGRDEL
ARLGQDFDRM AEQIQAARKA LEDNAERLER AQAMGQMGDW EWDVQTGTLH WSPQLYCIFG
VSPESFTPSY DGYLDLVHPE DRPALLATVE AARSSGEPYT LDHRIVRPDG SIRVIQSQGE
ALRDADGRII KLRGTGLDVT ERKQAEAALF EAKERALVTL HSIGDAVITT DAQGIVTYLN
PVAEGLTGWR SSEATGQPLT KVFRIFNEFT LQPTQDPVKT CLEEGRIVAL ANHTVLMSRD
GATRAIEDSA APIRDRNGLI LGVVLVFHDV SKTRQMARQL SWQATHDALT GLFNRYEFEQ
RLAQALAQAR DRLAHHAVLY MDLDQFKVVN DTCGHSAGDE LLKQLAYLLM GKVRESDTLA
RLGGDEFGVL LENCPLDKAR EIAQELRQTV RDFRFSWKGK SFQIGISIGL VMISDGNLDL
AEVLSAADMA CYAAKDLGRD RIHVYHAEDA DLQRRHVEMQ AINRITDALT HDRFVLYTQR
IVATGAAGPD DGGEHMEILL RMVDEKGDLV PPGAFIPAAE RYDLMPAIDR WVIRRFFSTM
AQHIREECGV DGSGGSASGC LYAINISGAS INDETFLGFV TEQLETHRIP PTAICFEITE
TAAIANLTRA MNLINELRKR GCRFSLDDFG TGVSSFGYLK NLPVDYLKID GSLVKDIVSD
PIDRAMVDAI NRIGQVMGIH TVAEFVENDE ILASLRELGV DYAQGYGIDR PKPLLREG
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