| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1902 |
|---|
| Symbol | |
|---|
| ID | 7315232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 2027916 |
|---|
| End bp | 2028620 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643616793 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_002513970 |
|---|
| Protein GI | 220935071 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.617323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTCA AGAAACCGCA GGTGCGTTAC GCCGACACGC CGCAGCCTGC CACGCCGTAC
CAAGCTGCCG GCCAGGTATG GGACGACCGT ATCGGCTCGC CGCGCGTGCA GGCGAAGAAC
TGGCGCCTGA TGGCCTTCGG CTGCCTCACC CTCGCGTTGC TGATGGCCGG CGGCCTGGTG
TGGCGCTCCG CGCAGTCCTT TGTGACGCCC TACGTCGTGG AGGTGGACAA CGCGGGCCAG
GTGCGCGCAG TGGGCGAAGC CGCCACGCCA TACAAGCCCA GCGACGCACA GACCGCGTAC
CACCTAGGCC GCTTCATCGG CCTGGTTCGC TCGCTGTCCA TCGACCCCAT CGTCGTGCGC
CAGAACTGGC TCGACGCCTA CGACTACACG ACCGACAAGG GCGCGGCCGT GCTCAACGAC
TACGCGCGGG TCAACGACCC GTTCGCGCGC ATCGGCAAGG AGTCGGTGAC GGTGCAGATC
ACCAGCGTCG TGCGCGCCAG CGACACGTCT TTCAACGTGC GCTGGACAGA ACGCCGCTAC
GTCAACGGCG CCGCGGCGGG ACTGGATCGG TGGACGGCCG TGGTGTCCAT CGTGCTCCAG
CCGCCGCGCA CCGAAGAACG CCTGCGCAAG AACCCCCTGG GCATCTACGT CAACGGCCTG
TCGTGGAGCC GCGAACTGGA TTCTTCCGAA GGAGCCAAGC CATGA
|
|---|
| Protein sequence | MRFKKPQVRY ADTPQPATPY QAAGQVWDDR IGSPRVQAKN WRLMAFGCLT LALLMAGGLV
WRSAQSFVTP YVVEVDNAGQ VRAVGEAATP YKPSDAQTAY HLGRFIGLVR SLSIDPIVVR
QNWLDAYDYT TDKGAAVLND YARVNDPFAR IGKESVTVQI TSVVRASDTS FNVRWTERRY
VNGAAAGLDR WTAVVSIVLQ PPRTEERLRK NPLGIYVNGL SWSRELDSSE GAKP
|
|---|
| |