| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1851 |
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| Symbol | |
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| ID | 7315181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 1967078 |
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| End bp | 1970983 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643616742 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_002513919 |
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| Protein GI | 220935020 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0114339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGACT CGCGCGTCAT CCGACAACCC CTGTACGCCT GGCTGACCCT GGCGGCAGGC
TTACTGCTCA CATTCTTCTT TGCCACCCTG GCCAAGGATC TGGCCGAAGA AGACGCCATC
GATCATTTTT CCTTCGCTGC CGATCAGGTC ACGGTCAAGA TCGACGAACG CCTGCGCGCC
TATGCCCTGG TGCTGCGAGG TGGCGCTGCG CTGTTTGATG CCTCCGAGGA GGTCACCCGG
GATGAATGGC GCGCCTTCAC CGACAAGCTC AGTGCCTCGG AGACCGTGGT GGGGATCCAG
GGCATCGGCT TTTCCCTGCT GATCCGGCCC GAAGAGCTCG AAGACCATAT CACCCGCATC
CGGGCCGAGG GTTTTCCCGA ATACCAGGTC TGGCCGGCCG GTGAGCGCGA GCTCTATTCC
GCCATCGTCT ACCTGGAACC GTTCAGGGGT CGCAACCTGC GCGCCTTCGG CTATGACATG
TTCTCCGAGC CGGTGCGGCG TGCCGCGATG ATCCAGGCCC GCGACACCGG CATGGCCGCC
CTGAGCGGCA GAGTGGAACT GGTCCAGGAG ACCGGCACCG GCGTCCAGCC CGGCACCCTG
ATGTACGTGC CGGTCTATCG TCAGGGCGCC GCCTGGGGCA CGCTCGAGGA GCGACGCGAG
GCGCTGATCG GCTGGTCGTA CAGCCCCTAC CGCATGTATG ACCTGATGGG CGGCATCCTG
GGCAATGACC ACCAACATCT CAACGGCCAG GCCGTCGGCC TGAGCATCTA TGATGGCGAG
GCGAGGCCGG AGAACCTGCT ATACCGCAAT TTCGAGTCCG CGCTGGATAC CGGGCCGAGC
CTGTTCTTCC GCCAGCGCGT TATCGACTTC AATGATCGGC AATGGACACT GCATTTCGAC
CATCTGGATC CGTCCAGTGG CATCGACTAC ACCTCTGCCT GGGCCACCCT CGCCGGCGGC
CTGGTGCTCA GCGGGCTGCT GTTCAGTCTG CTCCTGAGCA TGGCCAACAC CCAGGCCCGG
GCCTTGCGCA TCGCCGACCA GCTCACCGTG GACATCCGCG ACCGCGAGGC CCGGCTGAGT
GACAGTGAAT ACCGCTGGCG CTTCGCCCTG GAGGGGGCCG GCGACGGTGT CTGGGACTGG
AACCTGGAAG ACAACACCGT GTACTTCTCC CGACGCTGGA AATCCATGCT CGGCTTCGAG
GACCAGGAGA TCGGCCAGGG CCTGGATGAA TGGCAACGCC GGGTGCATCC GGATGATCTG
GACAGCACCC TGGCGGAACT GAAGGGCTAC CTGAATGGAG ATCGCGGCGA GTACGTCTCC
GAACACCGCA TGCGCTGCAA GGACGGCAGC TGGAAATGGA TCCTGGATCG CGGCATGGTG
GTCAGTCGCG ATGGGCAGGG GCGCCCGCTG CGCATGATCG GCACCCACAC GGACATCTCC
GGACAAAAGG CCCTGGAGGC TGCCCGCGAG GAAATCCTCG CGCGACTTCA GACCATCACC
AGCCGGGTCC CCGGCGTGGT CTATGAATTC AGGCTCCAGG CGGACGGCCG CTCCTGCTTC
CCCTACGCCA GCGAAGCGAT CCGCCAGATC TACCGTGTCA GCCCCGAGGA GGTGAAGACA
GATGCCTCGG CCGTGTTCGC CATCCTGCAC CCCGACGACT ACGATGCCGT GGTCGAGTCG
ATCCAGCATT CGGCGCGCCA TCTCACGCCC TGGCGCCATG AATACCGGGT GAAATTCCCG
GACGGCACGG TTCGCTGGCT GTACGGCGAT TCCCTGCCCC ATCGCGAACC GGACGGTTCG
ACTCTCTGGT ACGGCTTCAT CACCGACATC ACCGAACGCA AGGAGGCGGA GGCCGCGCTG
CGCAAGGCAC ACAGCGAGAC CCAGCGCTTC CGCGAGGCCC TGGATTACGT CTCCTCCTTC
ATCTACATGA AGGACACCCA GTCCCGCTAT ACCTACGCCA ACCGCGCCAC GCTGGAGCTG
TTTGGCACGA ACGACCACGA TCTGCCCGGC AGCGATGACT TTCGCTTCTT CTCGGACAGC
ACGGCCCATC GCCTGCGGGA GATCGACCGG CACGTGTTCC TGGGTGAACA GACCTCCGAG
GAGATCGAGG CCGTCGATCC CGGCGGTCAC CGGCGGGTGT ACCTGGAGAT CAAGACCCCC
ATCTACGACG AGACGGAGCG GGACGAGGTG ATCGGTCTGC TGGGGATCTC CACCGACATC
ACCGCCATCA AGGAACACGA ACGCCAACTG GAGCACATCG CCCATTTCGA TGCCCTGACC
AACCTGCCCA ACCGGGTGCT GCTGGCCGAC CGCCTGCACC AGGCCATGGC CCAGGCCGTG
CGCCGCGGTC ACCACCTGGC CGTGGCCTAC CTGGACCTGG ATGGATTCAA GGCCATCAAC
GACCGCTACG GCCACGCCGT GGGGGACAAG CTGCTCATGG CGGTAGCGCA ACAGATGCAC
GAGGTCCTGC GTGAGGAGGA TACCCTGTCC CGCCTGGGCG GTGACGAGTT CGTCGCCGTG
CTGCTGGATC TTGCGGACGT GGAGGCCTGC GTGCCGCTGC TCACCCGCCT GCTCGCCGCG
GCGGCCCGCC CGGTCAGTAT CGAAGGCAGG GAACTGAGGA TCTCCGCGAG CCTGGGTGTC
ACCTTCTATC CCCAGGCGGA GCAGATCGAG GCCGAGCAGT TACTGCGCCA GGCCGACCAG
GCCATGTACC AGGCGAAGCT CGCCGGCAAG GGCCGCTACC ACGTCTTCGA CGCGGAGCTG
GATCGCAGTG TGCGCACCCA CCACGAGAGC CTGGAGCGCA TCCGCAGCGC CTTCGAAAAC
GATGAGTTCG TCCTCCACTA CCAGCCCAAG GTCAACATGC GCAGCGGGGC CGTGATCGGC
GCCGAGGCCC TCATCCGCTG GCAGCATCCG GACAAGGGTC TCCTGCCGCC AGGGGACTTC
CTGCCCGTGA TCGAAGACCA CCCGCTGGCC ATCGAACTGG GGGAATGGGT GATCACCCGC
GCGCTGCAGC AGATGGCCTC CTGGCAGACT GCCGGGCTTG TCCTTCCGGT GAGCGTCAAC
ATCGGTGCCA GCCAGCTTCG CCAGGACACT TTCGTCAGCC GTCTCAGGAC ACTGCTGGAT
GGGTTCCCTG AGATATCCCC GGGCTCCCTG GAACTGGAAA TACTCGAAAC CAGTGCGCTG
GGCGACCTGG CCCTTGTGAC CCGATTGCTG GATCAATGCC GCGCCATCGG CGTGAACATC
GCACTGGATG ATTTCGGCAC AGGCTACTCG TCGCTCACCT ACCTCAAGCG CCTGCCCGCA
GGCGTGGTGA AGGTGGACCA GAGCTTCATC CGGGACATCC TCATGGACCC GGAAGACCTC
GCCATCCTGG ACGGCGTGCT GGGGCTGGCC GGCGCCTTCA ACCGACAGGT GATCGCCGAG
GGCGTGGAAA CCGTGGAGCA CGGCGACATG CTGCTCAGGA TCGGCTGCGA ACTGGCCCAG
GGCTATGGCA TCGCGCGCCC CATGCCCGCC GAGGCGTTGC ACGACTGGGT CAAGCGCTGG
CGCCCCGAAC CCCACTGGCC TCGCCTGCGG CGGATCAGCC GCGAGCTGAT GCCGCTGCTC
CACGCCGGGG TCGAACACCG TGCCTGGCTA GAGGATCTGG ACAGGGCACT ACGCAGCGGA
AGCAGCGACT TCCCGCCGCT GGGCCCGCAC CAGTGCCGAT TCGGAACCTG GCTCGACCAG
CTCGGCGATC AGCTGCAACC GGGCTTCGGG CAGATCGACC TGCTGCATCG CCAGGTACAT
GCACTTGCCG CGGAACTGAT CGAGCTGCAT GAGCGTGGCG ACGCCGCGCA GGTCATCGCC
CGGCTCGACG AGCTTCATGC GCTCAGTGAG CGTCTGCTGG AAGCCTTGCG AAATTACCTC
GACTGA
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| Protein sequence | MPDSRVIRQP LYAWLTLAAG LLLTFFFATL AKDLAEEDAI DHFSFAADQV TVKIDERLRA
YALVLRGGAA LFDASEEVTR DEWRAFTDKL SASETVVGIQ GIGFSLLIRP EELEDHITRI
RAEGFPEYQV WPAGERELYS AIVYLEPFRG RNLRAFGYDM FSEPVRRAAM IQARDTGMAA
LSGRVELVQE TGTGVQPGTL MYVPVYRQGA AWGTLEERRE ALIGWSYSPY RMYDLMGGIL
GNDHQHLNGQ AVGLSIYDGE ARPENLLYRN FESALDTGPS LFFRQRVIDF NDRQWTLHFD
HLDPSSGIDY TSAWATLAGG LVLSGLLFSL LLSMANTQAR ALRIADQLTV DIRDREARLS
DSEYRWRFAL EGAGDGVWDW NLEDNTVYFS RRWKSMLGFE DQEIGQGLDE WQRRVHPDDL
DSTLAELKGY LNGDRGEYVS EHRMRCKDGS WKWILDRGMV VSRDGQGRPL RMIGTHTDIS
GQKALEAARE EILARLQTIT SRVPGVVYEF RLQADGRSCF PYASEAIRQI YRVSPEEVKT
DASAVFAILH PDDYDAVVES IQHSARHLTP WRHEYRVKFP DGTVRWLYGD SLPHREPDGS
TLWYGFITDI TERKEAEAAL RKAHSETQRF REALDYVSSF IYMKDTQSRY TYANRATLEL
FGTNDHDLPG SDDFRFFSDS TAHRLREIDR HVFLGEQTSE EIEAVDPGGH RRVYLEIKTP
IYDETERDEV IGLLGISTDI TAIKEHERQL EHIAHFDALT NLPNRVLLAD RLHQAMAQAV
RRGHHLAVAY LDLDGFKAIN DRYGHAVGDK LLMAVAQQMH EVLREEDTLS RLGGDEFVAV
LLDLADVEAC VPLLTRLLAA AARPVSIEGR ELRISASLGV TFYPQAEQIE AEQLLRQADQ
AMYQAKLAGK GRYHVFDAEL DRSVRTHHES LERIRSAFEN DEFVLHYQPK VNMRSGAVIG
AEALIRWQHP DKGLLPPGDF LPVIEDHPLA IELGEWVITR ALQQMASWQT AGLVLPVSVN
IGASQLRQDT FVSRLRTLLD GFPEISPGSL ELEILETSAL GDLALVTRLL DQCRAIGVNI
ALDDFGTGYS SLTYLKRLPA GVVKVDQSFI RDILMDPEDL AILDGVLGLA GAFNRQVIAE
GVETVEHGDM LLRIGCELAQ GYGIARPMPA EALHDWVKRW RPEPHWPRLR RISRELMPLL
HAGVEHRAWL EDLDRALRSG SSDFPPLGPH QCRFGTWLDQ LGDQLQPGFG QIDLLHRQVH
ALAAELIELH ERGDAAQVIA RLDELHALSE RLLEALRNYL D
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