| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1840 |
|---|
| Symbol | |
|---|
| ID | 7317650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1952884 |
|---|
| End bp | 1954143 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643616731 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_002513908 |
|---|
| Protein GI | 220935009 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTACG AACACATCAA GATCCCCGAC AATGGCGAAA AGATCACCGC CAATGACGAC
AATTCCCTGA ACATTCCCAA TCATCCCATC ATCCCCTACA TCGAGGGCGA CGGCATCGGC
GCGGACATCA CCCCGGTGAT GAAGAAGGTG GTGGATACCG CGGTGGACAA GGCCTACGGC
GGCAAGCGCG CCATCGCCTG GATGGAGATC TACGCCGGCG AGAAGGCCAC CAAGGTCTAT
GACAAGGACA CCTGGCTGCC GGCGGAGACC CTGGATGCGG TGCGCGAGTA CGTGGTGTCC
ATCAAGGGCC CGCTGACCAC CCCCGTGGGC GGCGGCATCC GTTCCCTGAA CGTGGCCCTG
CGCCAGGAAC TGGACCTGTA CGTCTGCCTG CGCCCGGTGC GCTACTTCAA CGGCACCCCC
AGCCCGGTGA AGGAACCGGA GAAGACCGAC ATGGTGATCT TCCGGGAGAA CTCCGAGGAC
ATCTATGCCG GCATCGAGTG GGAATCCGGT TCCGCCGAGG CCCAGCGGGT GATCGACTTC
CTGATCAACG AGATGGGCGT GCACAAGATC CGCTTCCCGG ACACCAGCGG CATCGGCATC
AAGCCCGTCT CCAGCCAGGG CACCCAGCGA CTGGTGCGCA AGGCCATCCA GTACGCCATC
GACAACGATC GCGACTCGGT GACCCTGGTG CACAAGGGCA ACATCATGAA ATTCACCGAG
GGGGCCTTCA AGAGCTGGGG CTATGCACTG GCCAAGGAGG AGTTCGGTGC CAAGGAGATC
GACGGCGGCC CCTGGTGCAG CTTCAAGAAC CCCAGGACCG GCAAGGAGAT CATCATCAAG
GACGTGATCG CCGACGCCTT CCTGCAGCAG ATCCTGCTGC GCCCGGCCGA GTACAGCGTG
ATCGCCACCC TGAACCTCAA CGGCGACTAC ATCTCCGATG CCCTGGCGGC CCAGGTGGGC
GGCATCGGCA TCGCCCCCGG CGCCAACCTG TCCGACAAGG TGGCCATGTT CGAGGCCACC
CACGGCACCG CGCCCAAGTA CGCCGGCCAG GACAAGGTCA ACCCAGGCTC CCTGATCCTG
TCCGCGGAGA TGATGCTGCG CCACATGGGC TGGACCGAGG CGGCCGACCT GATCATCAAG
GGCCTGGAGG GCGCCATCGA GTCCAAGCAG GTGACCTACG ACTTTGCCCG CCTGATGGAC
GGCGCCACGG AACTGTCCTG CTCCGCCTTT GGCGACAACA TGATCAAGCA CATGGGCTGA
|
|---|
| Protein sequence | MAYEHIKIPD NGEKITANDD NSLNIPNHPI IPYIEGDGIG ADITPVMKKV VDTAVDKAYG
GKRAIAWMEI YAGEKATKVY DKDTWLPAET LDAVREYVVS IKGPLTTPVG GGIRSLNVAL
RQELDLYVCL RPVRYFNGTP SPVKEPEKTD MVIFRENSED IYAGIEWESG SAEAQRVIDF
LINEMGVHKI RFPDTSGIGI KPVSSQGTQR LVRKAIQYAI DNDRDSVTLV HKGNIMKFTE
GAFKSWGYAL AKEEFGAKEI DGGPWCSFKN PRTGKEIIIK DVIADAFLQQ ILLRPAEYSV
IATLNLNGDY ISDALAAQVG GIGIAPGANL SDKVAMFEAT HGTAPKYAGQ DKVNPGSLIL
SAEMMLRHMG WTEAADLIIK GLEGAIESKQ VTYDFARLMD GATELSCSAF GDNMIKHMG
|
|---|
| |