| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1605 |
|---|
| Symbol | |
|---|
| ID | 7316231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1721332 |
|---|
| End bp | 1722336 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643616497 |
|---|
| Product | putative periplasmic protease |
|---|
| Protein accession | YP_002513675 |
|---|
| Protein GI | 220934776 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.741471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA TTCAGGACTA TGGCCTGTTT CTCGCCAAGA CCCTCACCCT GCTGTTCGCG
GCCCTGGTGC TGTTCGGCAC GCTCGTGGCC CTGGCGACCC GGGGGCGGGA GCGCACCCGG
GAGCAGCTCA CGGTCAAGCG CCTCAATGAC CGCTACCGGG ACATGGAACG CACCCTCAAG
CACGCCATGT CCGGAGGACG CGCGGCCAAG AAACTGGTGC GCCAGTTCAA GAAGGAGTCG
AAGGCGGAGG AAAAGGCCCG GGACGAGAAC CGGCCCCGGG TGTTCGTACT GCGCTTTCAC
GGTGACATCC GCGCCACCCA CGTGGACAAC CTGCGCCAGG AGGTCTCGGC GGTGCTCACC
CAGGCACGCC CCGGCCAGGA TCGGGTGGTG GCCTGCATCG AGAGCGGCGG CGGCCTGGTG
GCGCCCTACG GACTGGGTGC GGCACAACTG GCGCGGCTGC GGGAGGCAGG TGTGGATCTG
ACTGTGGCCG TGGACCGGGT GGCCGCGAGC GGCGGCTACC TCATGGCGGC GGTGGCCAAC
CGCATTGTCG CCGCCCCGTT CGCCATCGTC GGCTCCATCG GCGTGGTGGC ACAGATCCCC
AACGTCAACC GTCTGCTCAA GCGTCACGAC GTGGACATCG AGATGCACAC CGCCGGGCAG
TTCAAGCGCA CCCTGACCGT GCTGGGCGAG AACACCCCCG AGGGTCGTGA GAAGTTCAAG
CAGGAACTGG AAGAGATCCA CGCGTTGTTC AAGGGGTATC TGAAGCGTTA CCGCCCTACC
CTGGATCTGG ACAAGCTCGC CACCGGCGAA CACTGGTACG GCGAACAGGC TTTGCCGCTC
GGCCTGGTGG ACGAACTGGC CACCAGCGAC GACCTGCTCA TGGGGCTGTC AAAGGAGGCG
GATCTCTACG AGGTCCATTA CCAGAAGCGC GAACCACTGG CACGGCGCAT CACCCTGGCG
GTGGAAGGGG CCATTGAGCG GGCGCTGCAC AGGGATTCCG TCTAG
|
|---|
| Protein sequence | MEFIQDYGLF LAKTLTLLFA ALVLFGTLVA LATRGRERTR EQLTVKRLND RYRDMERTLK
HAMSGGRAAK KLVRQFKKES KAEEKARDEN RPRVFVLRFH GDIRATHVDN LRQEVSAVLT
QARPGQDRVV ACIESGGGLV APYGLGAAQL ARLREAGVDL TVAVDRVAAS GGYLMAAVAN
RIVAAPFAIV GSIGVVAQIP NVNRLLKRHD VDIEMHTAGQ FKRTLTVLGE NTPEGREKFK
QELEEIHALF KGYLKRYRPT LDLDKLATGE HWYGEQALPL GLVDELATSD DLLMGLSKEA
DLYEVHYQKR EPLARRITLA VEGAIERALH RDSV
|
|---|
| |