| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1601 |
|---|
| Symbol | |
|---|
| ID | 7316227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1717041 |
|---|
| End bp | 1719014 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643616493 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_002513671 |
|---|
| Protein GI | 220934772 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.243118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA CCTCCGTCGC CGTCACAAGG CTGTCGGACT GGTATGCGGA TCTGCCACCC
CTGCAACGCG GGTTGCGGCT GGCGGCGGAG GTCCTGTTCT ATCTCGTCGG GGCGTATTTC
TTCTTCCACC TGTCCCGGTA CTTCGTCACC GGGGCGGGTG GCCCTACCCT GCTGGCGGTG
GTGGGCGTGC CGCTCACCAT CTGCATCGTC TACCTCAACG ACCTGCGCCG GGGGGATCTC
TACCCGCGGC TGGGCCATGT GGCGCCGTTT CTCATCGCGC TGGTCTATTG CGCGATCTGT
CTCTATGCCA TCCACTACCT GGTGCGCGAG TTCGACGAGA TCCGCATCTA CCGCCTGGGG
CTGTGGAACA CCCACGACCT GGCGGTGGGC GTGGCCGTGG CCGCCCTGGT GATGGAGTAC
ACCCGCAGGC GCTACTTCGC GCTGTTCGTG TTGAACATCC TCCTGATCCT CTACACGGTC
TACGGCTACC TGGTGCCGGG CCTCTTTAAC CACCCGGGCA TGACCTGGAA CCGGGTGGCC
AGCGCGGTGA GCGTGGAGAT GTCCACCGGG GTGTTCGAGC GTCTGCCCCA GCTGGGGCTC
ACCCTGATCG GTTCCTTTAT CCTGGTGCTG GCGGCGCTGC GCGCCTTCGG CTGCATCGAC
TCCATCCTGT TGGGCTCAAC CCGCATTGCC GTGCGCTCCC CTCGCCTGCT GCCCCAGGCG
GCGGTGATCG GCTCCTTCGG TGTGGCTGCG GTCTCCGGCT CCGGGGCCGC TAACGCGGCC
ACCACGGGCA CTGCCACCAT CCCGGTGCTC ATCAAGGCCG GCTTTCCCCG GGTCACGGCG
GCGGCGGTGG AGACCGCCTC CTCCCTGGGT GGGCAGCTCA TGCCGCCGCT CATGGGCATC
GCCGCCTTCC TCATGGCCGA TTACCTGGGC ACCAGCTACT TCGAGGTGGT GGCCCGGGGT
TTTGCACCGG CCATCATCTT CTACATTGGG GTCGCCTTCG CGGTGTGGAT GCTGGCGGGA
CGCTATTACA AGCGTGCCGT ATCGCCCAGG GCCGAGCCCA TGAATTTCAT GGACTGGGCC
AACATCGCCG CCTACTTCAT CGCCGTCGCA GGCCTGATCT ATTTCATGGG TGTCGAGCGC
CGGCCCGCCA TGGCCGCGGC CCAGACGGTG TTCAGCTACC TGTTCATCTT CCTGGCGCTC
GCGTTTATCG TGCGCAGCAT CAAGGGCCGG AAGTATTCCT TCACCTGGTT CACGCGCCCC
CTGCTGCGCA TGATCGAATC CTATGCCAGC ATCACGGCGG AGCTGACCAT CCTGCTGGCC
ACCCTGGGCA TCCTCACCGC CACCTTCACC ATCACCGGTG TCCCCACCAA GGTGGGCATC
CTGCTCATGG AAGGCGCCGG CATCAATCTG GCGCTGATGG TGCTGGTGGG CTTCGGCTTC
GGCTACATCA TCGGCATGGG CCTGCCCGTG GCGCCCACCT ACATCATCAT CGCCATCGTG
GTCTCGCCGT TCATGATCCG CGCCGGCGTC GACCCCTGGG TGGTGCACTT CTTCGCCTTC
ATGGTGGCGG TGTTCGGTGA ACTGTCACCG CCCACCTCGG TGACCGCAGC CGTCACCTCG
CGCATCGCGG AAGCGCCCTT CGTGCGCACC ATGATGGTGG CCATGGTGAT CTGCATGCCG
CTGATGCTCA TGATGGGTGC CGTGTTCACC CGGCCGGAAC TGGTGGTGAC GCCGGGTCTC
GCCCAGCTGC CGGCCTTTGT CCTGGTGCTG ATCGGAACGC TGGCCATCAG CTTTGCCCTG
CAGGGCAGCT TCGGTTATGC GCGCGGCCCG GACATCCTGC TTCGTCTCGT GCTCGCGGGC
ATCGCCGGCG GCGCCGTGTT CCATCCCGAC AACACCACCG CCGCGGCCTT CGCCGCACCC
GCCCTGGCCA TGAGCCTGTT CGGCGTCTGG CGCTACCGCC GGTACGCGGT CTGA
|
|---|
| Protein sequence | MSETSVAVTR LSDWYADLPP LQRGLRLAAE VLFYLVGAYF FFHLSRYFVT GAGGPTLLAV
VGVPLTICIV YLNDLRRGDL YPRLGHVAPF LIALVYCAIC LYAIHYLVRE FDEIRIYRLG
LWNTHDLAVG VAVAALVMEY TRRRYFALFV LNILLILYTV YGYLVPGLFN HPGMTWNRVA
SAVSVEMSTG VFERLPQLGL TLIGSFILVL AALRAFGCID SILLGSTRIA VRSPRLLPQA
AVIGSFGVAA VSGSGAANAA TTGTATIPVL IKAGFPRVTA AAVETASSLG GQLMPPLMGI
AAFLMADYLG TSYFEVVARG FAPAIIFYIG VAFAVWMLAG RYYKRAVSPR AEPMNFMDWA
NIAAYFIAVA GLIYFMGVER RPAMAAAQTV FSYLFIFLAL AFIVRSIKGR KYSFTWFTRP
LLRMIESYAS ITAELTILLA TLGILTATFT ITGVPTKVGI LLMEGAGINL ALMVLVGFGF
GYIIGMGLPV APTYIIIAIV VSPFMIRAGV DPWVVHFFAF MVAVFGELSP PTSVTAAVTS
RIAEAPFVRT MMVAMVICMP LMLMMGAVFT RPELVVTPGL AQLPAFVLVL IGTLAISFAL
QGSFGYARGP DILLRLVLAG IAGGAVFHPD NTTAAAFAAP ALAMSLFGVW RYRRYAV
|
|---|
| |