| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1582 |
|---|
| Symbol | |
|---|
| ID | 7316208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1697441 |
|---|
| End bp | 1698697 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643616475 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002513653 |
|---|
| Protein GI | 220934754 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0904474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCCCA GCCTTGTCAG GCCCCGGACA GTCCTGTTCG GTCTGCTGTT GTTTTCATTT
GCGTTAGTGG CCAACGCCCA GTGGACACTG GAGCGCAGCG TCGAGCGCGC CATCTCGGTA
TCACCTGAAC TGGATGCCGC AGAGGCCCGC GTCGAGGCCC GGCGTGCCGC CGCCCGACAG
GCCGGTGCCT GGCCCAATCC CACCCTGGAA CTGAAGGCCG ACAACGGCAT CGCCCGGGAG
CGGGGCGGGG ACGCCCATGA GTTCTCGGAG CTGGCCATCA CCCAACCCCT GTCCCTGGGT
CTGAGTTCGG CCAGACAGGC AGCAGGTGAG GCCAGGACCC TGGTTGAAAC CGAGGCTCTG
CGCGCCGAAC ACCTGGATCT GGAATATCGC GTCGCTGGTG CCTACCACCG CCTGCAACTG
GCCCAGACGT TGCTGGCACA GGCTCGGCAG GCCTCCCGCG AGGCTGATGA TTTTGCCTCC
GCGAGTGAAC GCCGTGCGGC ACAGGGGGAT ATCTCACGGC GCGAGACCCT GCGTCTTCAG
GTCCTTGCAT CGGAGGCGCG TCAGGTCATC GAGGCGACGC AAGGCGAGTG GCAGGAGGCC
CGCAGTGCCT TTGCCGCCTT GCTGGATATG AGGCCGGAGC AGGTCGGCGA TCTGCCCCCT
CTCACCGAAG TACCGGGCTT GCAGCCTCTG TCACACTGGA CGGGTTACCT GGAATCCCAC
CCGAGTCTGC AAATTCAACA GGCAAACCTG ACGGCTACTC TTGCAGACCG GCGTGTGGCA
CGCGCCGAGC GTTTGCCGCA ACTGGGTGTG CGCGTCTTTG CGGAAAGGGA TCTGGTGGAC
GGTCGTCGCG AATCGGTGAC CGGCGTCGGT CTTTCCCTGG AGATTCCCTT TTGGGACCGC
AGACAGGGAC GCCTGGAGGA ACTGGCCGCC ACCACAACCG AGACCCAGGC CCGCTTGAGA
GGCGAGCACC GGCAGTTGCT CAGCCGTGTC CGGGCACAGC ATCAGCGTCT GACTCATCTT
GTGGCGCAGG CCCGGCACCA ACGCAGCGCC GTACTGGAGC CCGCGCGGGA AATCCTTGAC
CTGAGCAGCC AGGGTTACCT GAGTGGCGAG CTTGATCTGC TCGCCCTGAT CGAGACCGTG
CAGACGGTGC GTCAAGCCGA AAACCGATAC CTGCAACTGC TGGCCGATGC CTGGCAGGAA
CTGGCCGCAC TGCGCGCCAG CGCCGGCCTT TTACTCGTTT CCATCGATTC GGAGTGA
|
|---|
| Protein sequence | MYPSLVRPRT VLFGLLLFSF ALVANAQWTL ERSVERAISV SPELDAAEAR VEARRAAARQ
AGAWPNPTLE LKADNGIARE RGGDAHEFSE LAITQPLSLG LSSARQAAGE ARTLVETEAL
RAEHLDLEYR VAGAYHRLQL AQTLLAQARQ ASREADDFAS ASERRAAQGD ISRRETLRLQ
VLASEARQVI EATQGEWQEA RSAFAALLDM RPEQVGDLPP LTEVPGLQPL SHWTGYLESH
PSLQIQQANL TATLADRRVA RAERLPQLGV RVFAERDLVD GRRESVTGVG LSLEIPFWDR
RQGRLEELAA TTTETQARLR GEHRQLLSRV RAQHQRLTHL VAQARHQRSA VLEPAREILD
LSSQGYLSGE LDLLALIETV QTVRQAENRY LQLLADAWQE LAALRASAGL LLVSIDSE
|
|---|
| |