| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1555 |
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| Symbol | |
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| ID | 7316179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1667362 |
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| End bp | 1670145 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643616446 |
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| Product | transporter |
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| Protein accession | YP_002513626 |
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| Protein GI | 220934727 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCACG CCCCTGACAA GGCACCGGTC GTTTCGGCCG GGGCCGCCCC TGCCCCCGGG
GCGGCGCAGA TGGCCGCCAC CATGGAGATG GGGGCCCGGG ACCCGGGTCG CCTGACCCGC
GGCCTGATCT ACGCCACCGC GCTGGCCTGG TCCCTGTTCC AGGTCTGGAT CGCCTCTCCC
TTCGGGTACT GGATCGGCGC CTTCGTCATT CCCGAGACCC AGGCCCGGGC CATTCACCTG
GCCTTCGGCG TGTTCCTCGC CTATCTGGCC TTTCCCGCCT TCTCGCCCCT GGCCAGGGGT
CACCGCCCCC TGGCCAGGGT CTTCTACATC GTATTCGGCC TGGGGCTCCT GTCCCTGGCC
GCCTACAACC ATCTCTCGGA ACTGCCCCGC GCGGGGGTGT TCGCCCTGAT CGGCGGGGTG
GTGCTCGCCA TGGCCTGGCC CAGCCTGCGG CCCTGCCCCG TGACCCGGGT ACCGGCCCTG
GACTGGATCT TCGCGGCCCT GGCGGCGTTC TGCGCCGCCT ACCTGTACCT GTTCCACCAG
GAACTGGCCC AGCGGCCCGG ACGCGCCACG CCCACTGACC TGGTGGTGGC CGGTGTGGGC
ATGGCCCTGC TGCTGGAGGC CACCCGCCGG GTGCTGGGAC CGGCCCTGAT GATCATCGCC
GGGGTGTTCC TGTTCTACAC CTTCGCTGGC CCCTGGATGC CGGAGCTGCT GGCCCACCGG
GGTGCCTCTT TCGGCCGGGC CATGTCCCAA CAGTGGCTCT CCAACGAGGG GGTGTTCGGC
ATCGCCCTGG GGGTCTCCAC CAGCTTCGTG TTCCTGTTCG TGCTGTTCGG TGCCCTGCTG
GAACGGGCCG GGGCCGGCGG CTATTTCATC CGCGTGGCCT TTGCCCTGCT CGGACACCTG
CGCGGCGGTC CCGCCAAGGC GGCGGTGGTG GCCTCGGGGC TCACCGGCGT GGTGTCCGGT
TCCTCCATCG CCAACGTGGT GACCACCGGC ACCTTCACCG TGCCGCTCAT GAAACGGGTG
GGTCTCTCCG GACAGAAGGC GGGCGCCGTG GAAGTGGCCA GTTCCGTGAA CGGCCAGCTC
ATGCCGCCGG TGATGGGCGC CGCCGCCTTT CTCATGGTGG AGTACGTGGG CATCCCCTAC
GTGGAGGTGA TCCGGCACGC CTTCCTGCCG GCGGTGATCG CCTACATCGC CCTGCTCTAC
ATCGTGCACC TGGAGGCGAT GAAGCTGGGA CTGGAGGGCC TGCCCCGCTC CCGGATCGTC
CCGGTCTGGC ACCGGCTGCT GGGCTTCGCC CTCACGGTCT CCGGGCTGCT GATCCTGGCG
GGCGGGGTCT ATTACGGCCT GGGCTGGATC AAGGGGGTCG CCGGAGATGC ATCGCCCTGG
ATCATCGGGG TGCTGGTGCT CGCGGCCTAC GGACTGCTGC TCTGGTTTTC CAGCCGGGTG
CCCGAATCCC ACATGGTGGA CGAGGAGCAC CTGGTCCTGC CCGAACCCCG GCCCACCATC
CAGAGCGGCC TGCACTTCCT GCTGCCGGTG GTGGTGCTGG TCTGGTGCCT GGTGGTGGAA
CGCCTCTCCC CCGGCCTGTC CGCCTTCTGG GCGGTGATGT TCATGGTATT CATCCTGCTC
ACCCAGCGTC CGCTCCTGTG CCTGTGCCGC GGACAGACCG GCCAGGGTCG GGCCGTGCTG
CGCGGGGTGA AGGAACTGGG CGACGGCATG GTGCAGGGGG CGCGCAACAT GGTGGGCATC
GCCGTGGCCA CCGCCGCCGC CGGCATCATC GTGGGCACCG TGGGCATGAC CGGCATCGGC
CTGGTGATGA CCGACCTGGT GGAACTGCTC TCCGGCGGCA ACCTGCTGCT CATGCTGCTG
CTCACCGCGC TGATCTGCCT GGTCCTGGGC CTGGGCCTGC CCACCACGGC CAACTACATC
ATCGTCGCCA CCCTGATGGC GCCGGTGATC GTGGATCTGG CCGCCCAGAA CAACCTGCTG
ATCCCGCTCA TCGCCGCGCA CCTGTTCGTG TTCTATTTCG GCATCATGGC GGACGTCACC
CCGCCGGTGG GCCTGGCCTC CTTCGCCGCC GCCGCCGTGG CAAGGGCCGA CCCCATCCGC
ACCGGGGTGC AGGCCTTCTG GTACAGCCTG CGCACCGTGG CCCTGCCGTT CTTCTTCGTG
TTCAACACCC AGCTGCTGCT GATCGGCATC ACCAGCGCCT GGCAGCTGTT ACTGACCTTC
TTCGGGGCGC TGACTGGCAT GCTGGTGTTC GCCGCCGCCA CCCAGGGATG GTTCCTGACC
CGCAGTCGCT GGCACGAGTC CGCCCTGCTG CTGGGCGTCG CCTTCACCCT GTTCGTGCCC
GGTTTCTGGA TGGATCGCAT CCACCCGCCC CTTCAGACCG TGGAGCCCGC CCGCCTGCAA
CAGGTGGCCG AGGCCACGCC CGCCGGGGGC CACCTGCGCT TCACCCTCGA GGGCATGGAC
CTGGAGGGTC GGGAGATCGC CAGGGCCGTG ATGCTGCCGC TCGGGGATGC CGGCGCCGGT
GCGGAGCGCC TGACCCGGGC AGGTCTCGGC ACCCTGGCCC TGGGCGACCA GGTGAGCGTG
AGCTTCGTAA GTTTCGGCAG CCCCGCCGAA CGCCTCGGTA TCGAGAGCGG CTGGCGCATC
ACCGGCGTGC TGGTACCGGC GGACCGGCCG GCGCCGGAGT GGTTCTATCT GCCGGCGCTG
GGTGTGCTGG GTGTGATATG GCTGCTGCAG CGGCGGCGCC TCGGGTTGGC ACGTGAGGGG
AAAGGCGTGA GGCGTCAGGG GTGA
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| Protein sequence | MAHAPDKAPV VSAGAAPAPG AAQMAATMEM GARDPGRLTR GLIYATALAW SLFQVWIASP
FGYWIGAFVI PETQARAIHL AFGVFLAYLA FPAFSPLARG HRPLARVFYI VFGLGLLSLA
AYNHLSELPR AGVFALIGGV VLAMAWPSLR PCPVTRVPAL DWIFAALAAF CAAYLYLFHQ
ELAQRPGRAT PTDLVVAGVG MALLLEATRR VLGPALMIIA GVFLFYTFAG PWMPELLAHR
GASFGRAMSQ QWLSNEGVFG IALGVSTSFV FLFVLFGALL ERAGAGGYFI RVAFALLGHL
RGGPAKAAVV ASGLTGVVSG SSIANVVTTG TFTVPLMKRV GLSGQKAGAV EVASSVNGQL
MPPVMGAAAF LMVEYVGIPY VEVIRHAFLP AVIAYIALLY IVHLEAMKLG LEGLPRSRIV
PVWHRLLGFA LTVSGLLILA GGVYYGLGWI KGVAGDASPW IIGVLVLAAY GLLLWFSSRV
PESHMVDEEH LVLPEPRPTI QSGLHFLLPV VVLVWCLVVE RLSPGLSAFW AVMFMVFILL
TQRPLLCLCR GQTGQGRAVL RGVKELGDGM VQGARNMVGI AVATAAAGII VGTVGMTGIG
LVMTDLVELL SGGNLLLMLL LTALICLVLG LGLPTTANYI IVATLMAPVI VDLAAQNNLL
IPLIAAHLFV FYFGIMADVT PPVGLASFAA AAVARADPIR TGVQAFWYSL RTVALPFFFV
FNTQLLLIGI TSAWQLLLTF FGALTGMLVF AAATQGWFLT RSRWHESALL LGVAFTLFVP
GFWMDRIHPP LQTVEPARLQ QVAEATPAGG HLRFTLEGMD LEGREIARAV MLPLGDAGAG
AERLTRAGLG TLALGDQVSV SFVSFGSPAE RLGIESGWRI TGVLVPADRP APEWFYLPAL
GVLGVIWLLQ RRRLGLAREG KGVRRQG
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