| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1507 |
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| Symbol | prpD |
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| ID | 7317994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1616488 |
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| End bp | 1617936 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643616398 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_002513578 |
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| Protein GI | 220934679 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.371923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCACC ACATCGCCGA CACCAACGTC CGCCCCGAAC CCGATCCGGA ACTGAAAGCC
ATCGCGGACT ACGTCTGCGA CTACCCCATC GATTCCGCCG AGGCCCTGGA CACGGCGCGC
AACTGCCTGA TGGATTCCCT GGGCTGCGCC ATGCTGGCCC TGCAGTATCC GGAATGCACC
AAGCACCTGG GCCCCGTGGT GCCGGGCACG GTGGTGCCCA ATGGCAGCCG CATCCCTGGC
ACCCCGTACC AGCTGGACCC CATCCAGGCC GCCTTCAACA TCGGTGCCCT GGTGCGCTGG
CTGGACTTCA ACGACACCTG GCTGGCCGCG GAATGGGGCC ACCCCTCGGA CAACCTGGGC
ACCATCCTGG GTCTGGCCGA TCACCTGAGC CGCAAGGCGG TGGCCGAGGG CAAGCGAGCC
ATGACCATCG ACGACGTGCT GCGCTACATG GTCAAGGCCC ACGAGATCCA GGGCGTGCTG
GCGCTGGAGA ACAGCTTCAA CCGGGTGGGT CTGGACCACG TGGTGCTGGT GAAGGTGGCC
TCGGCGGCGG TGGCCGCCCA CATGCTGGGC GCCAGCCGTG ACCAGGTGAT CGATGCCCTG
TCCCAGGCCT GGGTGGACGG CCAGGCACTG CGCACCTATC GCCACGCGCC CAACACCGGC
TCACGCAAGT CCTGGGCGGC GGGCGATGCC TGCGGCCGTG CGGTGCGCCT GGCGCTGATG
GTGATGAAGG GCGAGATGGG CCTGCCCAGT GTGCTCTCCG CCCCCCGCTG GGGTTTCTAT
GACGTGCTGT TCAAGGGCGA GAAGTTCCGC TTCCAGCGGG ACTACGGCAG CTACGTGATG
GAGAACGTGC TGTTCAAGAT CAGCTTCCCC GCCGAGTTCC ACGCCCAGAC GGCGGTGGAA
TGCGCCATGC AGTTGCATGC CCAGGTGAAG GACCGCATCG ACCAGATCGA TCGCATCGAA
CTCAGCACCC AGGAATCCGC GGTGCGCATC ATCAGCAAGG ACGGCCCCCT GCACAACCCG
GCGGACCGGG ACCACTGCCT GCAGTACATG GTGGCCGTGC CCCTGATCTT CGGCGAGCTC
ACCGCCCGCC ACTACGAGGA CGAGGTGGCC GCCGACCCGC GCATCGATGC CTTGCGCGAG
AAGATGCGGG TGGTGGAAGA TCCGCGCTAC TCGAAGGAAT ACCATGACCC GGACAAGCGC
TCCATCGCCA ACGCCGTGCA GGTCTTCTTC AAGGACGGCA GCAGCACCGA CAAGGTGGAA
GTGGAATATC CGATCGGACA CCGCCGCCGC CGCGCCGAGG GCATCCCGGT CCTGGAGAAC
AAGTTCCGCG ACGCCCTGCG CACCCGTTTC CCCCGCGGCC AGGCCGCGCG CATCTACGAC
CTGTGCAAGG ACCCGCAGCG ACTCGGCGCT ACGCCAGTGC ACGAATTCAT GGATCTGTTT
TTGATCTGA
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| Protein sequence | MSHHIADTNV RPEPDPELKA IADYVCDYPI DSAEALDTAR NCLMDSLGCA MLALQYPECT
KHLGPVVPGT VVPNGSRIPG TPYQLDPIQA AFNIGALVRW LDFNDTWLAA EWGHPSDNLG
TILGLADHLS RKAVAEGKRA MTIDDVLRYM VKAHEIQGVL ALENSFNRVG LDHVVLVKVA
SAAVAAHMLG ASRDQVIDAL SQAWVDGQAL RTYRHAPNTG SRKSWAAGDA CGRAVRLALM
VMKGEMGLPS VLSAPRWGFY DVLFKGEKFR FQRDYGSYVM ENVLFKISFP AEFHAQTAVE
CAMQLHAQVK DRIDQIDRIE LSTQESAVRI ISKDGPLHNP ADRDHCLQYM VAVPLIFGEL
TARHYEDEVA ADPRIDALRE KMRVVEDPRY SKEYHDPDKR SIANAVQVFF KDGSSTDKVE
VEYPIGHRRR RAEGIPVLEN KFRDALRTRF PRGQAARIYD LCKDPQRLGA TPVHEFMDLF
LI
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