| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1353 |
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| Symbol | |
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| ID | 7317845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1450167 |
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| End bp | 1452983 |
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| Gene Length | 2817 bp |
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| Protein Length | 938 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643616243 |
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| Product | ribonuclease E |
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| Protein accession | YP_002513425 |
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| Protein GI | 220934526 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000765938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGAA TCCTGATCAA CGCCACGCAG CCCGAAGAGC TGCGTGTGGC CATGGTAGAT
GGCCAGAAAC TCTACGACCT GGACATCGAA GTCCCCTCCC GGGAGCAGAA AAAGGCCAAC
GTCTACAAGG CCGTCGTCAC CCGGGTTGAG CCCAGCCTCG AAGCCGCCTT CGTCAACTAT
GGCGCCGAGC GCCATGGCTT CCTCCCCCTA AAGGAAATCG CCCGCAGCTT CCTGCCCGGC
GCCGGCGATG AAGACAGCCC CCAGGGGTCC ATCAAGGACC TGGTCAAGGA GGGCATGGAA
CTCATCGTCC AGGTGGAGAA GGAAGAGCGC GGCAACAAAG GCGCGGCGCT GACCACCTTC
GTGAGCCTGG CCGGCCGCTA CCTGGTGCTG ATGCCCAACA ACCCCCGCGC CGGCGGCGTC
TCCCGGCGCA TCGAGGGCGA GGACCGCAGC GAGATCCGCG AGGCCCTGAG CCAGCTGGAA
GTCCCCCAGG GCATGGGCCT GATCGCCCGC ACCGCCGGCG TCGGCCGTGG CGTGGAAGAA
CTGCAGTGGG ACCTGGAATA CCTCAAGACC CTGTGGGCCG CCATCACCGA GGCCGCCGAG
AAGCGCAAGG GTCCGTTCCT GATCTACCAG GAAAGCAACG TCATCATCCG CGCCCTGCGC
GACCACCTGC GCAATGACAT CGCCGAGATC ATCGTCGATG TCCCGGCGGT CTATCAGCAG
GCCCAGGAAT TCATGCAGCA GGTGATGCCC AACAACCTGC GCAAGCTCAA GCTCTACGAA
GAGCATGTGC CCCTGTTCAA CCGCTACCAG ATCGAGAGCC AGATCGAGGC GGCCTTCCAG
CGGGAGGTCT CCCTGCCCTC CGGCGGCGCG ATCGTCATCG ACCACACCGA GGCCCTGATC
TCCATCGACG TGAACTCCGC CCGCGCCACC AAGGGTAGCG ACATCGAGGA GACCGCGCTC
AACACCAACC TGGAGGCGGC CGACGAGATC GCCCGCCAGC TGCGCCTGCG GGATCTGGGC
GGCCTGATCG TCATCGACTT CATCGACATG GGTCCCGCCA AGAACCAGCG GGAGGTGGAA
AACCGCCTGC GCGACGCGCT CGAAATGGAC CGCGCCCGGG TGCAGGTGGG ACGTATCTCC
CGCTTCGGCC TGCTGGAGAT GTCCCGCCAG CGCCTGCGCC CCTCCCTGGG CGAATCCAGC
CAGATCGTAT GCCCCCGCTG CAGCGGCCAC GGCCACATCC GCAGCGTCGA GTCCCTGGCC
CTGTCGGTGC TGCGCCTGAT CGAGGAAGAG GCCATGAAGG ACAAGACCGG CCGCGTGCTC
GCGCAGCTGC CGGTGGATGT CGCCACCTTC CTGCTCAACG AGAAGCGTGA TGCGGTCAAC
GGCATCGAGC GCCGCCACGA CGTGATGGTC ACCCTGGTGC CCACCCCGGA CATGGTCACG
CCCCACTTCA ACGTGCGCCG CATCCGCATG GACGAGATGC CCGAGGAACT GCGCGGCAAG
AGCAGCTACC AGATGCTGCC CGAGGAAGAA CTGCCCGAGC CCATCACGGT GCGCCCGGTC
AGCGCTCCGG TGGAACGCGC CGCGGTGCAG ACCATCCGCC CCGCCACCCC GGCACCGGTG
AGCCCGGAAC CCGTGGAGGC CCCCGCACGG GCACAGGTGC CCGTGGCCCA GCCCGGCTTT
TTCGCGCGCA TCTGGAGCAG CCTGTTTGCC GGCGCGCCAC GCAGCGAGGC CGAGACCGAA
ATCGAAGAGA GCAAGTCCCG CGCCCGGCGC AGCAGCACCG GCCGTGGCGG ACGTGATGCC
CGGGACAGCG AGGCTGAACG GGGCGGCCGT GGTCGTCGCC GCAGCAGCAC CCGGGATCGT
CGCCGCGAGG ATGCGGGTGA AGGCCGCCCC CGCCCCAGCC AGGATAAGCC CGCGCAGGAA
AGACCGGCCC CTGAGAAGCC CGCTGCCGAG AAGGCACCGG CAGCCGAGAA GCCTGCCATC
GAAAAACCCG CACGCGAGAA ACCTGTCCGT GAGGCAAGCC AGACCGCTGA CAGCAACGCA
GAGCGACCGG AGACCGGCGG TGAAGGCGGT GGCCGCAGCC GTGGGCGTCG CGGTGGACGT
CGCCGTCGCC GCGGTGGTGG TGGCGGCGAG CGCGGTGCTG ACCAGCAGCG TCAGGGTGAC
GAGGGCGGCA ACGGCGGGGA ATCCCGTGGC GCCGCCCCCT CTGGCGAATC CGGCCAGGGC
GGTGAGCGCA AGCCCGCCGA GCGTCCCCGC AGCGAGTCTG ACAAACCCCA GGCCAGTGAA
CGCGGTGAAT CCCGTGCTCC GGCCCGGGAA AGCAGGCCTG CCGCCGAGCA GCCTGCGGCC
CCGTCGGGTT CGACCAGCCA GTCCCCGTCA CAACCCGTGA GCCAGCCCCA GACCCAGAGC
ACGGGCCAAG GCACAGGCCA GGCAGCGACC CAGCCCTCCG GCGAGGCCGG TCCCAAGCCG
GCACCCCGGA GCGAGGCACC GTCGCCTGCG CCGGCGGCCA GGCCTCCGGC TGCGGCTCCA
AGCGGCCAGA TCGCCCCCGG CCCGGCACCC GCTCCGGCGG CACCGAAACC GGTGGCGCCC
GCGGCCAGCA GCCCATCCCG TGAGGCCCCG CCCTCGGACC AGGCGCGTCC CGCTATGGCC
CAGGGCGGCG GTGAATCCGG CAGCCGGCCG CCCGCACCCC CGGCTCAGGC GCCCGCGCCT
TCAGCCGTGC CCCCGGCACC GGCATCCGCA CCGGTGTCTG CGCCCACAAG CACCGACAAG
GCAGCGCCCC GGGAATCGGG CGCGTCGGAG AAGCCCAAGG AGCAGACTCC GGGCTGA
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| Protein sequence | MKRILINATQ PEELRVAMVD GQKLYDLDIE VPSREQKKAN VYKAVVTRVE PSLEAAFVNY
GAERHGFLPL KEIARSFLPG AGDEDSPQGS IKDLVKEGME LIVQVEKEER GNKGAALTTF
VSLAGRYLVL MPNNPRAGGV SRRIEGEDRS EIREALSQLE VPQGMGLIAR TAGVGRGVEE
LQWDLEYLKT LWAAITEAAE KRKGPFLIYQ ESNVIIRALR DHLRNDIAEI IVDVPAVYQQ
AQEFMQQVMP NNLRKLKLYE EHVPLFNRYQ IESQIEAAFQ REVSLPSGGA IVIDHTEALI
SIDVNSARAT KGSDIEETAL NTNLEAADEI ARQLRLRDLG GLIVIDFIDM GPAKNQREVE
NRLRDALEMD RARVQVGRIS RFGLLEMSRQ RLRPSLGESS QIVCPRCSGH GHIRSVESLA
LSVLRLIEEE AMKDKTGRVL AQLPVDVATF LLNEKRDAVN GIERRHDVMV TLVPTPDMVT
PHFNVRRIRM DEMPEELRGK SSYQMLPEEE LPEPITVRPV SAPVERAAVQ TIRPATPAPV
SPEPVEAPAR AQVPVAQPGF FARIWSSLFA GAPRSEAETE IEESKSRARR SSTGRGGRDA
RDSEAERGGR GRRRSSTRDR RREDAGEGRP RPSQDKPAQE RPAPEKPAAE KAPAAEKPAI
EKPAREKPVR EASQTADSNA ERPETGGEGG GRSRGRRGGR RRRRGGGGGE RGADQQRQGD
EGGNGGESRG AAPSGESGQG GERKPAERPR SESDKPQASE RGESRAPARE SRPAAEQPAA
PSGSTSQSPS QPVSQPQTQS TGQGTGQAAT QPSGEAGPKP APRSEAPSPA PAARPPAAAP
SGQIAPGPAP APAAPKPVAP AASSPSREAP PSDQARPAMA QGGGESGSRP PAPPAQAPAP
SAVPPAPASA PVSAPTSTDK AAPRESGASE KPKEQTPG
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