| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1297 |
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| Symbol | |
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| ID | 7317788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1391710 |
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| End bp | 1394490 |
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| Gene Length | 2781 bp |
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| Protein Length | 926 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643616187 |
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| Product | signal transduction protein containing a membrane domain an EAL and a GGDEF domain |
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| Protein accession | YP_002513370 |
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| Protein GI | 220934471 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCTGC GCTTCTCGCT CCAGATCATC ATCGGTGCCG TGGCCATCCA GGTGGCTATG
GTGAGCCTGC TGGTCTGGAA CACCACCCAC CAGATCCGCG AGAGCCACAC GGAGCTGCTG
GTGCGCTCCG CGGAGCAACA GAGTCTGCTC ATGACAAGCG CCCTGGTGCC GGGACTCGCC
TACAGCGACG CCGCCATGCT TCAGGACGTG CTGCAGCTGG TCTCCGGCCA GCCCGACCTG
GTATACGCCG TGGTGATCGA TGCCGGCGAG CGGCGCCTGG CCGTCGTGGG CACGCCGCCG
GAGTCCCTGT TGCCGGTGAC CGGCACCCAG GTCGACGAGC GTGGCCAGGT GCACATCACC
CGCCGCATCG ACCTGGCCGG TCAATCCCTG GGGCTGCTCG GCGTGGGCTA CTCTCCCGAG
GGCGTCAACG CCCTGAGCGA CGCCTTGCTG GAGCGCAACG TCACCCTCGG TATCGCCATG
CTCGCCCTGT CCATCCTGGC CGCGGTGCTC TTCGGGCTCG TCATCACGCG GCGGCTCAGA
CGACTGGATG CCGGCGCGCG TGCCTTTCGA GCCGGGCGGC TGGATCATCG CATCCCCCCG
CTGGCCAATG ATGAAATGGG CGACCTGGCC CGCACCCTCA ATGCCCTGGC CTCGGACCTG
GGCCAGTCCC AGAGCACGCT GCGCCAGCAG AACCTCAAGC TCAACCGCTC CGTGGAACGC
ATGGAGGCCC TGTTGCGCGG CGCCGAGGCG GTGCTCTGGG AGGCGGAACC GGCCACCGGG
CAGTGGCGTT TCGTCAACGG CGACACCCAG GCCATCCTGG GCATCTCCGC CCAGCAGATC
GGTCAGCCCG GCATCCGCGA GGCCCGCGTG CATGCCGATG ACCTGCCCCG GCTGCGCGAG
ACCTACCGAC AGGCGGGGCC GACCCCCAGC TCCGTGGACT ACCGCTACCG CAGCAACGAG
GCAAGCTGGG TCTGGCTCAG GGACATCGTC TCCTCGGCCA GCGACAGCGA TGGACACGCG
GTGCTGCGCG GTCTGACCCT GGATGTGAGC CCACAGCGAC AGGCCGCGTT GGCCCTCAAG
GACAGCGAGA GCCGTTACCG CGAGGTCATC GAACACGTCT CGGAGGTCAT CTTCCGGACC
GACCACCAGG GACGCTGGAC CCTGCTCAAT CCCGCCTGGG AAGAACTCAC CGGATACAGC
ATTGCCGAAT CCCTGGGCCG CCCGGTGAGC GAATTCGTCA GCGCCGAGGA CAGCCCCCTG
CTGGAGGCCC TGACGAACCA GCTGCTGCAT GGCAACAAGT CCCAACTCAG GGATGAATTG
CGCCTGCTCA CCCGAGCGGG CGAGCCCCGC TGGGTCTCCG TGTTCGTGCG CAGCAGCCAG
GACGCCGAGG GTCGCGTCAT CGCCACCTTC GGGACCCTCA CCGACATCAC CGAACGCAAA
CGCGCCGAGG AAGAGATCCG CCGACTGGCC TTCTACGACA GCCTCACGGA ACTGCCCAAC
CGCAGCCTGC TCTACGATCG CCTGCGTCTG GCCATGGCCA GCGCGGCCCG AAGCCGACAC
CACGGCGCGA TCCTGTTCCT GGACCTGGAC AACTTCAAGG ACATCAACGA CACCCTGGGC
CATGACGTGG GCGACGAACT GCTGCGGCAG GTGGCCAGCC GCATGCAGGG CACCATCCGG
GAAACCGATA CCCTCGCCCG CCTCGGCGGC GATGAATTCG TCATCATCCT CAACGACCTG
CATCCGGAAC AGGCCCAGGC GGCGGTCGAG GCCGAGACAC TCGGCAGCAA GCTGCTGCAT
CTGCTCGCCG AGCCTTTCCG GCTGGGTGAA CACGAGCGCC ACTGCACACC CAGTATCGGC
GCCACGCTGT TCGGTGATGG CGAGGTCAAC GTGGACGAAC TGCTCAAGCA GGCGGACCTG
GCCATGTACC GGGCCAAGGA TTCTGGGCGC AACACCCTGT GCTTTTTCGA ACCCGAGATG
CACCAGGTGG TCAAGGCGCG CGCGGCCCTG GAGGCAGACT TCAGAAAAGC GCTCCGGGAG
GATCAGCTGC ATTTGCACTA CCAGCCCCAC GTGGACGACC AGGGACACAT CCTCGGCGCC
GAGGCCCTGC TGCGCTGGTC CCACCCGGAA CGCGGCATGG TGCCGCCCAT GGAGTTCATC
GCCGTGGCCG AGCAGACCGG GCTCATCATC AAGCTCGGCC GCTGGGTGCT TCAAACCGCC
TGCCAGCAGC TCGCCCTCTG GCACCGGGAA AGCCAGTGGA TGCGGATCAA CATGGCAGTC
AACGTCAGCG CCAAGCAGTT CCGTCATCCG GATTTCGTGC GCGAGGTGGC CGAGATCCTG
CAATCCACCG GGGCACCGGC GCAACACCTG GTCCTGGAGC TGACCGAGAG CCTGTTGCTG
GAAGACACCG AGACCGTCAT CACGCGCATG AACGCCCTGA GGGAACTGGG CGTAGGCTTC
GCCCTGGACG ACTTCGGCAC GGGCTACTCC TCCCTCTCCT ACCTCAAGCG CCTGCCGCTC
TCCCTGCTCA AGATCGACCA GTCCTTCGTG CGCGACATCC TCGTGGACGC CAATGACGCG
GCCATCGCCG AGATGATCAT CACCCTGGCG AAGACCCTGG GATTGGAGGT GATCGCCGAG
GGCGTGGAAA CACCGGAGCA GCGGGATTTC CTGCTGGAAA TGGGCTGCCA CCAGTTCCAG
GGCTACCTGT TCGGCCGCCC GGGGCCTGTG GATCAACTGG AGAAGCGACT CGTGGGCCGG
CGTACGGGGA CCCACAACTG A
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| Protein sequence | MRLRFSLQII IGAVAIQVAM VSLLVWNTTH QIRESHTELL VRSAEQQSLL MTSALVPGLA
YSDAAMLQDV LQLVSGQPDL VYAVVIDAGE RRLAVVGTPP ESLLPVTGTQ VDERGQVHIT
RRIDLAGQSL GLLGVGYSPE GVNALSDALL ERNVTLGIAM LALSILAAVL FGLVITRRLR
RLDAGARAFR AGRLDHRIPP LANDEMGDLA RTLNALASDL GQSQSTLRQQ NLKLNRSVER
MEALLRGAEA VLWEAEPATG QWRFVNGDTQ AILGISAQQI GQPGIREARV HADDLPRLRE
TYRQAGPTPS SVDYRYRSNE ASWVWLRDIV SSASDSDGHA VLRGLTLDVS PQRQAALALK
DSESRYREVI EHVSEVIFRT DHQGRWTLLN PAWEELTGYS IAESLGRPVS EFVSAEDSPL
LEALTNQLLH GNKSQLRDEL RLLTRAGEPR WVSVFVRSSQ DAEGRVIATF GTLTDITERK
RAEEEIRRLA FYDSLTELPN RSLLYDRLRL AMASAARSRH HGAILFLDLD NFKDINDTLG
HDVGDELLRQ VASRMQGTIR ETDTLARLGG DEFVIILNDL HPEQAQAAVE AETLGSKLLH
LLAEPFRLGE HERHCTPSIG ATLFGDGEVN VDELLKQADL AMYRAKDSGR NTLCFFEPEM
HQVVKARAAL EADFRKALRE DQLHLHYQPH VDDQGHILGA EALLRWSHPE RGMVPPMEFI
AVAEQTGLII KLGRWVLQTA CQQLALWHRE SQWMRINMAV NVSAKQFRHP DFVREVAEIL
QSTGAPAQHL VLELTESLLL EDTETVITRM NALRELGVGF ALDDFGTGYS SLSYLKRLPL
SLLKIDQSFV RDILVDANDA AIAEMIITLA KTLGLEVIAE GVETPEQRDF LLEMGCHQFQ
GYLFGRPGPV DQLEKRLVGR RTGTHN
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