| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1229 |
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| Symbol | |
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| ID | 7315481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1318218 |
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| End bp | 1320302 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643616117 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_002513302 |
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| Protein GI | 220934403 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.810164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACC TTCTCCGCCT GCTGATCATC GAGCGTGACC TGAACGACGC CGAGATGATG
ATCAGCACCA TCAAGTCGGC CGGTTTCGCC GTCAGGCCCG AACGGGCTGA AGACCAGGAC
GATCTCCTGG AAAAACTCCA GAAACACGCC CCCGACGTGG TGCTCTGCAC CCTGGACTCC
GAACCGGAAC TGGGTCTCGA ACAGGTCATG TCCGGCATCC GCGACATGGG CAGGCATGTG
CCGGTGATTG CGATTGCCAA CGATGCCAAT CAGGACGTGG TGGACTGCCT CGCCCTGGGC
GCCCACGACA TGGTACGCAA GGATCGCCCG GACCATCTCA AGCTGGTGGT GACCCGCGCC
GCCGAGGCTC AGCGCCACTG GCGTCAGCTC AAGACCCAGG AATCCTCCCT GCGCGAGGCC
GAGCGACGCT GCAAGAACCT GCTGGACAGC TCCCGCGACG CCATCGCCTA CGTGCATGAC
GGCATGCACA TCTACGCCAA CCAGTCCTAC TTGGAGCTGT TCGCCTATAC CGATCCCGAC
GACCTGGAAG GCATGCCCAT CATGGACATG GTGGCCAAGG AGGACCAGGG CACCCTCAAG
GAATTCCTGC GCAACTACGA CCATGCCCCG GAGGGCAACG AGTCCGGCCA GTCGGTACAG
ATCAAGCTCA AGAACTCCGC CGGCGAGTCC TTCACCGCCC AGATGGAATT CACCCCTGCC
AGCATCGACG GTGAACCCTG CACCCAGATC CTGATCCGCA GTCAGGCCAA CACCAAGGAG
CTGGAGCAGC AGATCAACTA CCTGGCCCAG CGCGACCTGG TCACCGGGCT GTACAACCGC
CAGTACTTCA TGGAACGCCT GGAATCCGCC CTGGGCCAGG CCACCCAGGG CAAGGGCAAT
GCCGCCCTGG TAGAACTGCA GATCGACAAG TTCCAGGAGA TCCGCGACCA GGTGGGGGTC
GCCGGCAGTG ACCTGGTGCT CGGGGACGTG GGCAAGATCC TGGAGAAACA CTGCGGCCAG
AACGACGTGG TGGCGCGCTT CGACGGCGAG GCCTTCGCCA TCCTCACCAG CCACTGGGAA
ACGGCCGATG CCGAGGCCTT CCTCAAGGCC ATGCTCAAGG ACATCGCCGC CCTGATCTGC
GAGGTGGACA GCCGCTCCAT CACCTGTACC GCCTCGGCGG GCGTGACCCA GATCGATGAG
AACGCCCCAA GCGCCAATGA ATTGCTGTCC CGCGCCGCCA AGGCCTGCGA GGAGGCCCGC
AAGGCCGGCG GCAACCAGGC GGTGAGCTAC AAGCCCAAGG AAGGCGAGAT GACCCAGCGA
CAGCTGGACG AGTCCTGGAT CGCCCGCATC ACCGAGGCCA TCGGCAAGCA TCGGGTGCGC
CTGCTCTACC AGCCGGTGGT CAGCCTGCAC GGGGAATCCG GCGAACGCTA CGAGGTGCTG
ATGCGCCTGC TGGGCGAAGA CGGCCAGGAG ATCCCGGCAT CCGAGTTCAT GCCCAGTGCC
GAACGCACCG ACATGGCCAA GGTGCTGGAT CGCTGGGTCA TCAGCCACGC CCTGGACCAG
CTGGTGGAAC AACGCAAGAA GGGCAAGGAG ACCACCTTCT TCATCAAGCT CACCGCCGGT
TCCCTGCAGG AACCCGGCAT GCTGCCGTGG ATCGTGGAGC AGCTGAAGGA ACGGCGCATC
CCCGCCGAGT GCGTGGTGTT CGAGATGAAG GAGACCACGG TGGTCAATCA TCTCAAGCCC
GCCAAGGAAT TCGTCAGGGG CCTCAAGGGC CTGCACTGCC GCTTCGCGCT GGACGATTTC
GGCACCGGAC TGAACCCCTT CCAGCTGCTG CAGCACGTGC CTGCCGACTA CCTCAAGATC
GACAGCAGCT TCATGGACAG GCTGAGCAGC AGCGAGGAGA ACCAGGAAAG CATCCGCCAG
CTCACCGACG GGGCGCACGG CCAGAACAAG CTGGTGATCG CCCAGCACGT AGAGGATGCC
ACGGGGCTGT CCATCCTGTG GGGCATCGGC GTGAACTACA TCCAGGGCAA CTTCCTGCAG
GCACCCTCGG AGAAGCTCGA GTACGACTTC ACCTCCATGA GCTGA
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| Protein sequence | MENLLRLLII ERDLNDAEMM ISTIKSAGFA VRPERAEDQD DLLEKLQKHA PDVVLCTLDS
EPELGLEQVM SGIRDMGRHV PVIAIANDAN QDVVDCLALG AHDMVRKDRP DHLKLVVTRA
AEAQRHWRQL KTQESSLREA ERRCKNLLDS SRDAIAYVHD GMHIYANQSY LELFAYTDPD
DLEGMPIMDM VAKEDQGTLK EFLRNYDHAP EGNESGQSVQ IKLKNSAGES FTAQMEFTPA
SIDGEPCTQI LIRSQANTKE LEQQINYLAQ RDLVTGLYNR QYFMERLESA LGQATQGKGN
AALVELQIDK FQEIRDQVGV AGSDLVLGDV GKILEKHCGQ NDVVARFDGE AFAILTSHWE
TADAEAFLKA MLKDIAALIC EVDSRSITCT ASAGVTQIDE NAPSANELLS RAAKACEEAR
KAGGNQAVSY KPKEGEMTQR QLDESWIARI TEAIGKHRVR LLYQPVVSLH GESGERYEVL
MRLLGEDGQE IPASEFMPSA ERTDMAKVLD RWVISHALDQ LVEQRKKGKE TTFFIKLTAG
SLQEPGMLPW IVEQLKERRI PAECVVFEMK ETTVVNHLKP AKEFVRGLKG LHCRFALDDF
GTGLNPFQLL QHVPADYLKI DSSFMDRLSS SEENQESIRQ LTDGAHGQNK LVIAQHVEDA
TGLSILWGIG VNYIQGNFLQ APSEKLEYDF TSMS
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