| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1176 |
|---|
| Symbol | |
|---|
| ID | 7315427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1265253 |
|---|
| End bp | 1268741 |
|---|
| Gene Length | 3489 bp |
|---|
| Protein Length | 1162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643616063 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_002513249 |
|---|
| Protein GI | 220934350 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.239797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTA GCTTCGTACA TCTGCATCTG CATACCGAAT TCTCCCTGGT GGATGGTCTG
GTGCGCGTGG AGCCGCTGGT GCAGGCGGTG CGCGAGGCGG GCATGCCGGC GGTGGCGGTC
ACCGACCAGG GCAACCTGTT CGGCATGGTG AAGTTCTACA AGGCGGCGCT CAAGGCGGGC
ATCAAGCCCA TCGTGGGCGT GGATACCTGG GTCTCGGCGC CCCAGGCAGG TGAGGCCCCC
TCGCGGCTGG TGCTGCTGGC CCAGGACGAG GACGGATACC GCAATCTCAC CCGGCTGATC
TCGCGAAGCT ACCAGGAGGG TCAGCAGAGC GGCGACGCGC CGGTGCTCGA TCGCGGCTGG
TTCGACGGCG CGAGCCGCGG CCTGATCGCA CTCTCCGGGG GGCGCGAGGG CGAGATCGGC
CGCGCGCTCA TGGGCAGCCA GCCCTCTGCC GCCGAGGAGC TGTGTGAATT CTGGGAAGGC
CTGTTCCCGG GGCGCTTCTA CCTGGAGATC GGGCGCACCG GGCGTGAAGG CGAGGAGGAC
CACCTCCATG CCGCGGTGGA CCTGGCCCAG TCCCGCTCCC TGCCGGTGGT GGCCACCAAC
GACGTGCGCT TCCTGGCGGC CTCCGACTTC GACGCCCACG AGGCCCGGGT GTGCATCCAC
GACGGCCGGG TGCTGGATGA TCCCCGCCGG CCCCGGGACT ACACCCCGCA GCAGTATCTG
CGCACCGCCG AGGAGATGGC GGCGCTGTTT GCCGACATCC CCGAGGCCCT GGAAAACTCC
GTGGAGATCG CCCGGCGCTG CAATGTCTCC CTGACGCTTG GCAAGTCGGT GCTGCCGGAG
TACCCGGTCC CCGCGGGCAT GACCACCGAC GACTACTTCC GCAAGGCCTC CCGGGAGGGC
CTGGACGCAC GCCTGGCGGT GATCCTCGAG GGCGTCACGG ACAACCGCGA GGCAAAGGAG
CGCGCCTACC GGGAGCGCCT GGAGATCGAG CTGGACGTGA TCTGCCAGAT GGGCTTCCCG
GGCTACTTTC TGATCGTGGC GGACTTCATC CAGTGGGCCA AGGACAACGC CATCCCGGTG
GGTCCCGGGC GTGGTTCCGG CGCCGGATCC CTGGTGGCCT ACGCGCTCAA GATCACCGAT
CTGGACCCGC TGCTCTACGA CCTGCTGTTC GAGCGTTTCC TCAATCCCGA ACGCGTCTCC
ATGCCCGATT TCGATATCGA CTTCTGCATG GAGCAGCGCG ACCGGGTGAT CGACTACGTG
GCGCAGCGCT ACGGCCGCGA GAAGGTCTCC CAGATCATCA CCCACGGCAC CATGGCCGCC
AAGGCGGTAG TGCGCGACGT GGGCCGGGTG CTGGGCCACC CCTACGGCTT CGTGGACCGT
ATCGCCAAGC TGATCCCCTT CGAGATCGGC ATGACCCTGG ACAAGGCCCT GGAGCAGGAG
GAGGAGCTGC GCCGCCTCTA CGAGGAGGAC GAGGAGGTCA GCGGGCTGAT CGACCTGGCC
AGGAAGCTCG AGGGCGTGGC GCGCAACGCG GGCAAGCATG CCGGCGGCGT GGTGATCGCC
CCCACCGAGC TCACCGACTT CTCGCCGCTG TATTGCGAAC CGGGCGGGCA GAGCGTGGTG
ACCCACTTCG ACAAGGACGA CGTGGAGGCG GTGGGCCTGG TGAAGTTCGA CTTCCTGGGC
CTGCGCACGC TGACCATCAT CGACTGGGCA GTGCGCACCA TCGACCAGCA GCGCAAGGCC
GAGGGCCAGG CGCCCCTGGA CGTGAACCGC ATCCCCCTGG ACGACCCGGA GACCTTCGGC
CTGCTCAAGC GCCAGGAGAC CACCGCGGTC TTCCAGCTGG AATCCCGGGG CATGAAGGAG
CTCATCAAGC GCCTGCAGCC GGACGTGTTC GAGGACATCG TGGCCCTGGT GGCCCTGTAC
CGGCCGGGTC CGCTGCAGTC GGGCATGGTG GACGACTTCA TCAACCGCAA GCACGGCCGG
GCCAAGGTGG ACTATCCCCA CCCGGACCTG GAGCCCATCC TCAAGCCCAC CTACGGCGTG
ATCCTGTACC AGGAGCAGGT GATGCAGATC GCCCAGGTGC TGGCGGGCTA CACCCTGGGC
GGCGCCGACA TGCTGCGCCG GGCCATGGGC AAGAAAAAAC CCGAGGAGAT GGCCAAGCAG
CGGGAGATCT TCCTGGCCGG CGCCACCGGC CGGGGCGTGC AGGAGGCCAC CGCCAGCTAC
ATCTTCGACC TGATGGAGAA GTTCGCCGGC TACGGCTTCA ACAAGTCCCA TTCCGCCGCC
TACGCGCTGC TTTCCTACCA GACCGCCTGG CTCAAGCAGC ACTACCCGGC GGCCTTCATG
TCCGCGGTGC TGTCCGCGGA CATGGACCAC ACGGACAAGG TGGTGAACCT CATCGAGGAA
TGCCGGGCCA TGGAACTGCA TGTGGTGCCT CCGGACATCA ACCGCTCCCA GCACCGCTTC
GGGGTGGCCG ATGCCCGCAC GGTGATCTAT GGCCTGGGGG CCATCAAGGG GGTGGGCGAG
TCCGCCATCC AGGCCCTGAT CCAGGCCCGG GAGGCGGGCG GCCCGTTCCA GAGCCTCGAT
GACCTGTGCG TGCGTGCCGA CTCCCAGAAG ATCAACCGCC GCACCCTGGA GGCCCTGATC
CGGGCCGGGG CCCTGGATTC CATCGGCCCC AATCGGGCGA CCCTGATGGC CAATCTGCCC
AAGGCCCTGT CCCGGGCCGA GCAGCACCTG CGCAATGAGA GCCTGGGTCA GGAGGACCTG
TTCGGTGGCC CGGTCACCCC GGGTGCCTCG GACGTGGACG ACGAACAGCT GCCGGAATGG
GACGAGGACC TGCGCCTGTC CGCCGAGAAG GAGACCCTGG GGCTGTACCT CACCGGGCAC
CCCATCGACC GCTTCCAGGC GGAGCTCAAG GCCATTCACA GCAAGCGCAT CGCCGACCTG
GTGGCCGAGG TGGGTGACCA GACACCCGGA GAAGGGCGGC GGCGCAAGGA ACAGCAGGCC
ACCGTGGGTG GCCTGGTGAT CAACATCCGC ACCAAGCCCA CCCAGACCGG GCGCATCGGC
TTCGTGACCC TGGACGACCG CAGCGGGCGG ATCGAGGTGG GCCTGTTCGG GGAGGACTTC
AACCGCTACC AGCACCTGCT GGTGAAAGAC CGGCTGCTGG TGGTCCAGGG CCAGGCCGGG
GTGGACGAGT TCAACGGCGG TGTGCGCCTG CGCGCCCGCC AGGTCATGGA CCTGGACGAG
GCCCTGTCCC AGTGCGTGAA GGGCCTGGAC CTGCGCGTCC TGGGACGGCC CGTGAACGGC
CTGGTGGATG AACTCAAGGA TGCCCTGGCC CCCAGTCGGG AAGGGCCTTG CCCGGTCTAC
ATCCATTACC GGGACGACCG CTTCCAGGCC TGCTTCGAAC TGGGCGAGGA CTGGCGGGTC
AGGCCCAGCG GTGACCTGAT CGCCCGCCTG CGGGGGCTGC TGGGGGAGGA TGCAGTGGCG
CTGCGTTAG
|
|---|
| Protein sequence | MTTSFVHLHL HTEFSLVDGL VRVEPLVQAV REAGMPAVAV TDQGNLFGMV KFYKAALKAG
IKPIVGVDTW VSAPQAGEAP SRLVLLAQDE DGYRNLTRLI SRSYQEGQQS GDAPVLDRGW
FDGASRGLIA LSGGREGEIG RALMGSQPSA AEELCEFWEG LFPGRFYLEI GRTGREGEED
HLHAAVDLAQ SRSLPVVATN DVRFLAASDF DAHEARVCIH DGRVLDDPRR PRDYTPQQYL
RTAEEMAALF ADIPEALENS VEIARRCNVS LTLGKSVLPE YPVPAGMTTD DYFRKASREG
LDARLAVILE GVTDNREAKE RAYRERLEIE LDVICQMGFP GYFLIVADFI QWAKDNAIPV
GPGRGSGAGS LVAYALKITD LDPLLYDLLF ERFLNPERVS MPDFDIDFCM EQRDRVIDYV
AQRYGREKVS QIITHGTMAA KAVVRDVGRV LGHPYGFVDR IAKLIPFEIG MTLDKALEQE
EELRRLYEED EEVSGLIDLA RKLEGVARNA GKHAGGVVIA PTELTDFSPL YCEPGGQSVV
THFDKDDVEA VGLVKFDFLG LRTLTIIDWA VRTIDQQRKA EGQAPLDVNR IPLDDPETFG
LLKRQETTAV FQLESRGMKE LIKRLQPDVF EDIVALVALY RPGPLQSGMV DDFINRKHGR
AKVDYPHPDL EPILKPTYGV ILYQEQVMQI AQVLAGYTLG GADMLRRAMG KKKPEEMAKQ
REIFLAGATG RGVQEATASY IFDLMEKFAG YGFNKSHSAA YALLSYQTAW LKQHYPAAFM
SAVLSADMDH TDKVVNLIEE CRAMELHVVP PDINRSQHRF GVADARTVIY GLGAIKGVGE
SAIQALIQAR EAGGPFQSLD DLCVRADSQK INRRTLEALI RAGALDSIGP NRATLMANLP
KALSRAEQHL RNESLGQEDL FGGPVTPGAS DVDDEQLPEW DEDLRLSAEK ETLGLYLTGH
PIDRFQAELK AIHSKRIADL VAEVGDQTPG EGRRRKEQQA TVGGLVINIR TKPTQTGRIG
FVTLDDRSGR IEVGLFGEDF NRYQHLLVKD RLLVVQGQAG VDEFNGGVRL RARQVMDLDE
ALSQCVKGLD LRVLGRPVNG LVDELKDALA PSREGPCPVY IHYRDDRFQA CFELGEDWRV
RPSGDLIARL RGLLGEDAVA LR
|
|---|
| |