| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0988 |
|---|
| Symbol | |
|---|
| ID | 7316559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1067232 |
|---|
| End bp | 1067951 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643615874 |
|---|
| Product | NADH (or F420H2) dehydrogenase, subunit C |
|---|
| Protein accession | YP_002513063 |
|---|
| Protein GI | 220934164 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
|---|
| TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.600566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC GACTCGAGAA ACTGGCTGCG CGTCTTACGG AACGCTTCAA GGCGGCGGGC
GGCAAGGTGG ACAGCGCCTA CGGCGAGCTG ACCCTGACCG TTCCGGCGGC TGCCATGACC
GACACGGCCA AGGCGCTGCG TGACGATCTG GGCTTTGAGA TGCTGATCGA CCTGTGCGGC
GTGGACTACC AGGAATACGG CGTGGCCGAA TGGTCCACGG AAGAATCCTC CAACCAGGGC
TTCAGCCGCG GCGTGGAAAA GGCCACCTTC GGGCGCTTCA TCTTCGACGA GGTCGCCGAG
CGCAAGGCCC ACGAAGGTCC GCGCTTTGCC GTGGTCTACC ACCTTCTGTC CATCAGCGCC
AACCAGCGCC TGCGCATGAA GGTGTTCTGC GAAGATGAGG AGTTCCCCGT GGTTTCCACG
GTGACCGATG TCTGGACCTC CGCCGACTGG TACGAGCGCG AGGCATTCGA CCTGTTTGGC
ATCATGTTCG AGGGTCATCC CGACCTGCGT CGCATCCTCA CCGACTACGG CTTCGTGGGC
CACCCGTTCC GCAAGGACTT CCCGCTCGTC GGCCACGTGG AAATGCGCTA CGACCCCGAG
CAGGCCCGCG TCGTCTACCA GCCGGTGAGC ATCGAGCCCC GGGTGCTGGT GCCCAAGGTG
ATCCGCCAGG ATCACCGCTA TGTCCATGAA TCGGCCCAGG AGAAGTCCGC CGATGCCTGA
|
|---|
| Protein sequence | MSERLEKLAA RLTERFKAAG GKVDSAYGEL TLTVPAAAMT DTAKALRDDL GFEMLIDLCG
VDYQEYGVAE WSTEESSNQG FSRGVEKATF GRFIFDEVAE RKAHEGPRFA VVYHLLSISA
NQRLRMKVFC EDEEFPVVST VTDVWTSADW YEREAFDLFG IMFEGHPDLR RILTDYGFVG
HPFRKDFPLV GHVEMRYDPE QARVVYQPVS IEPRVLVPKV IRQDHRYVHE SAQEKSADA
|
|---|
| |