| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0676 |
|---|
| Symbol | |
|---|
| ID | 7317724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 727282 |
|---|
| End bp | 728247 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643615556 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_002512755 |
|---|
| Protein GI | 220933856 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.498278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCA CTAGCTTTGA TCCCCAGGAC ATGATCGGCG CATCTCCCGA ATTCCTCTCG
GTGCTGCGCG CTGCGCGGGT GGTCGCAGCC ACCGACGCCA CTGCCCTGGT GCTGGGGGAG
ACCGGCACCG GCAAGGAACT GCTGGCACGA TTGATCCACC ACGAGAGCCG ACGTGCCCAT
GGGTCCTGGG TGGCGGTCAA TTGCGCCGCC TTGCCCCAGG ATCTCATCGA GGCGGAGCTG
TTCGGTTACC GGCGCGGTGC CTTCACCGGG GCCGTGGCAG ACCGGCCCGG TTACATCCGC
CAGGCACAGG GTGGCACCCT GTTTCTGGAC GAGGTGGCCG AGCTGCCCCT GGGTGCCCAG
GCCAAGCTGT TGCGCTTCCT GGAACACGGA GAGTGTCAGG CCCTGGGCGG TGATCGCCCG
GAGCCGGTGG ACGTGCGCGT GCTCGCGGCC ACCCACCGGG ATCTGCGCCA CTGGGTGGAT
GCGGGCCGGT TCCGGGAAGA CCTCTACTAT CGGCTGCACG TAATTCCCCT GGAGTTGCCG
CCCCTACGCG AGCGGCCGGG GGACATTGGC GTGCTGCTGG ATGCCCTGAC CGAGCAGCTG
GCTGCCCGCC ACGGGGTCAA TCCGCCCCGT TTCTCCGCTC AGGCCCGTCG TCTGCTGACC
CGTCACCGCT GGCCCGGCAA CGTGCGGGAG TTGCGCAATC TCTGCGAGCG CAGCGTAGTG
CTGTTCAGCG GCCAGACCAT CGATCCGGAG CACCTGCATC TGGAGGCCCG CGCCGATACA
GCCGCAGACC TGCCGGACTG GCAACTGCCC CGGGACGGCG TGCAACTGGA CCGGTTGGAG
GCGGGTCTCA TCCGCCAGGC CCTGGGCCGC ACCCAGGGCA ACCGCGCCCG GGCCGCCCGC
CTGCTGGGCC TGACCCGGGA CACGCTGCTC TATCGCATTA AGAAGTACGC CCTGGAGGGG
GAGTAA
|
|---|
| Protein sequence | MQPTSFDPQD MIGASPEFLS VLRAARVVAA TDATALVLGE TGTGKELLAR LIHHESRRAH
GSWVAVNCAA LPQDLIEAEL FGYRRGAFTG AVADRPGYIR QAQGGTLFLD EVAELPLGAQ
AKLLRFLEHG ECQALGGDRP EPVDVRVLAA THRDLRHWVD AGRFREDLYY RLHVIPLELP
PLRERPGDIG VLLDALTEQL AARHGVNPPR FSAQARRLLT RHRWPGNVRE LRNLCERSVV
LFSGQTIDPE HLHLEARADT AADLPDWQLP RDGVQLDRLE AGLIRQALGR TQGNRARAAR
LLGLTRDTLL YRIKKYALEG E
|
|---|
| |