| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0645 |
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| Symbol | |
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| ID | 7316059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 676055 |
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| End bp | 679303 |
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| Gene Length | 3249 bp |
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| Protein Length | 1082 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643615526 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002512725 |
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| Protein GI | 220933826 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCGTC CTTTCGCTTC CCTGCTGCAC ATTCGCGTCC TGCCCTGGCT GGGTCTGCTC
CTGCTGGGCC TCGCCGGCTC ACCGGCCATG GCCGAGGACG GCGCGACCCT GCGCCTGGGG
GTGCTGGAGT TTCGCGGTGA GGCAGACGCC TGGTCACGCT GGTCGGCCAC GGCCCGCTAT
CTGGACGAGG CGCTGCCGGA TCACCGGGTG GAACTGCAGC CCCTGGATTT CAACCGGCTG
GAGCAGGTGG TGGCCCGGGG TGACGTGGAC CTGGTGCTGG CCAACCCGGG GTTCTATGCC
CTGCTGGAAA CCGCCCACGG CGCACGCCCC CTGGCCTCCC TGGACACCGG GCTGCGCTCC
GGCCAGGGCT GCTGCCGTTT CGGCGCGGTG GTGTTCACCC GGGCGGACCG GGACGATCTG
CGGCATCTGC AGGACCTGCA ACGCCAGCGC ATCGCAGCGG TGCACGAGCA CTCCTTCGGT
GGTTACCAGA TGCTGCTGCG CGAACTCCAC GACCTGGGCA TCTCGCAGCA CCGTACCCTG
GCGCGCATGG ACTTCCTGGG CGATCACGAC GCGGTGGTGC AGGCGGTGCT GAGCGGCCGT
TACGACGCGG GCGTGGTGCG CACCGGCATC CTGGAGGCCA TGGCCGAGGA ACGACGGGTG
CGCCTGGATG CCTTCCGGGT GGTGGGGGCG CGGGGTGCCG CTGAGGGTCT GTCACAGCGC
CTGAGCACCC GCCTGTATCC GGAGTGGCCC CTGGCGGCCT TGCCCCATGT GTCCGTGTCC
CTGGCCAACC AGGTCGCGGT GGCGTTGCTG CCCATGCCGG CGGAACATCC CGCCGCGCGG
GCCGCCGGCA TCCAGGGCTG GACCGCGCCG CTCAATTATC AGTCGGTGCA TGAACTGCTC
TACGCCCTGC GCCTGCCGCC CTACGACGCG CCCCGCCAGT TCAGCCTGTC CGAACTCTGG
GTCCAGTACC AGTGGCAGAT TTCCGCGGGG TTTCTCCTGC TGTTCGGGCT TGCCCTGGCC
CTGTTCCGGG GCCAGCGCCT CAACCGCCGG CTGGCGGAGG CCGGGCGCCT GTTGCAGTCC
CGGGTGGAGA TGCGCACCGA ACACCTCAAC GTGGCCAATC GCAGCCTGCA GCGGGAGGTG
GAACAGCGCC GCCAGGCGGA GGCCGAGGTG CTGGCCCAGT CCCGGCGCCA GGCCCAGGTG
CTGGAGGCCG TGGACGAGGC CATCTTCGGC CTGGATGCGG ATTGCCGGGT GGAGTTCGCC
AACCCGGCCG CCGAGGCACT GGCCGGGTGC AGCATCGGCC AGATGCGCGG TCAGCGCCTG
TCCGGGGTGC TGCAGATCCG CGACGATCAG GGACGCTCGG CCTGGGAGCC CGACGGGGAT
TGCCTGGCCG AGGATCCGAT GCCGGTGAGC ATCCGCCGCG CCTTTGATCA GACCCTCTAC
CACAGGGATG GCCGTGTGTT GGTGGTGGAT TACGCCTTCC GCCCCATTCT GGAAGGCGGG
CAGGTGCGCG GCGGCGTGTT CAGCTGTCGG GACATCACCG GGCGCAAGCG TATCGAGGAG
AGCCTGCGCC TGCATGCCCA GGTGTTCGAT ACCGCCACCG AGGGGGTGAT GATCGCCGAT
GCCCGCGGAC GCATCCTGAG CGTGAACCGG GCCTTCGAAC AGGTCACCGG CTACAGCGCC
GAGGAGGTGG TGGGCCGCAA TCCCAGCATC CTGTCCTCCG GACGTCAGGA CAAGGCCTTC
TACCGGCGCA TGTGGGACAC GATCAAGGGC GAGGGCATCT GGTCCGGCGA GATCTGGAAC
CGGCGCAAGG ACGGCGAGAT CTATCCCGAG TGGCTGACCA TCAGCAGCAT CGCCGGTCCG
AACGGCGAGG CCAGCCATTT CGTCGCGGTG TTCTCGGACA TCACGGCGCA GAAGCGCTCG
GAGCAGGAGA TCGATTTCCT CGCCAACCAT GACCCGCTCA CCGGCCTGGC CAACCGCAAC
CTGTTCGAGG ACCGGCTCGC CCACGCCATC AGCATGGCCG GGCGCAACGG CCAGCACGTG
GGCCTGCTGC TGGTGGACCT GGACCGCTTC CGGCTGATCA ACGACGGCAT GGGCCATGGC
CCGGGGGATG CCCTGCTGCG CGAGACCGGC CGCCGCCTCG GGCACTGCGT GCGTGATTCG
GACACCGTGG CCCGTCTGGG CGGTGACGAG TTCGGCATCA TCCTGGAGGG CCTGGCGGAT
GCCGCGGATG CGGGCATGCA GGCGGAGCGC ATTCTCGAGG CCATGCGCGC GCCGTTGCGC
CTGGGTGGCC AGGAACTGTT CTGCACGGTG AGCATCGGTA TCGCCGTGTT CCCCGCCGAC
GGCACGGACG CGGCCACCCT GCTGCGCCAT GCCGACACTG CCATGGCCCT GGCCAAGCGG
GAGGGTCGCA ACAACTTCCA GTTCTACACC CATGCCCTCA CCGAGGCGGT GTTCTCCCGC
CTGAACATCG AGACCGGTCT GCGCCACGCT CTCGAACGGG ACGAACTGCG CCTGCACTAC
CAGCCGATCC TGGATGCCGC CAGCGGTCGC ATCGCCGCTA TGGAGTCGCT GATGCGCTGG
CAGCATCCCG AGCGCGGCCT GGTGTCCCCC GGGGTGTTCA TCCCGGTGGC GGAGCAGAGC
GACCTGATCC TTGCCCTGGG GCGCTGGGCC CTGGTGAGCG CCTGTGCCCA GGTGCGGGCC
TGGTCCGATG CGGGGCTCGA ACCGGTGCCG GTGTCGGTGA ACATCCCGGC GTGTCATTTT
CGTCAGCCGG GCTTCGTGGA GGAGGTGCTG GGGGTGGTGC GCGAGACGGG GGTTCAGCCG
CAGTCCCTGA TCATCGAGCT GACCGAGAGT GCCCTGATGG AGCCCGTCAG CCTGGCGGAG
GAACGCATCA GACGCCTGCG CGACACAGGT GTGGTGGTGG CCATCGACGA TTTCGGCACG
GGCTACTCGT CACTGGGCTA CCTGCAGCGC TTCCACGTGA ACTACCTGAA GGTGGACCGC
TCCTTCGTCA GCGGCCTGCC CGGCGACGAG AATGCCCGGG CCATCACCGA GGCGGTGATC
GGCGTGAGCC ACAGCCTGGG CCTGCAGGTG GTGGCCGAGG GCGTGGAGAC CCAGGCCCAG
CTGGACCACC TGCGCGCCAC CGGTTGTGAC AAGGTGCAGG GCTACCTCAC CGGCCGGCCG
GTGACCGCCG AGGTGGCCGC CACCCTGTTG CCGGGGGCGG GCGAGAAGGT CATCAGTCTC
CCAGGCTGA
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| Protein sequence | MNRPFASLLH IRVLPWLGLL LLGLAGSPAM AEDGATLRLG VLEFRGEADA WSRWSATARY
LDEALPDHRV ELQPLDFNRL EQVVARGDVD LVLANPGFYA LLETAHGARP LASLDTGLRS
GQGCCRFGAV VFTRADRDDL RHLQDLQRQR IAAVHEHSFG GYQMLLRELH DLGISQHRTL
ARMDFLGDHD AVVQAVLSGR YDAGVVRTGI LEAMAEERRV RLDAFRVVGA RGAAEGLSQR
LSTRLYPEWP LAALPHVSVS LANQVAVALL PMPAEHPAAR AAGIQGWTAP LNYQSVHELL
YALRLPPYDA PRQFSLSELW VQYQWQISAG FLLLFGLALA LFRGQRLNRR LAEAGRLLQS
RVEMRTEHLN VANRSLQREV EQRRQAEAEV LAQSRRQAQV LEAVDEAIFG LDADCRVEFA
NPAAEALAGC SIGQMRGQRL SGVLQIRDDQ GRSAWEPDGD CLAEDPMPVS IRRAFDQTLY
HRDGRVLVVD YAFRPILEGG QVRGGVFSCR DITGRKRIEE SLRLHAQVFD TATEGVMIAD
ARGRILSVNR AFEQVTGYSA EEVVGRNPSI LSSGRQDKAF YRRMWDTIKG EGIWSGEIWN
RRKDGEIYPE WLTISSIAGP NGEASHFVAV FSDITAQKRS EQEIDFLANH DPLTGLANRN
LFEDRLAHAI SMAGRNGQHV GLLLVDLDRF RLINDGMGHG PGDALLRETG RRLGHCVRDS
DTVARLGGDE FGIILEGLAD AADAGMQAER ILEAMRAPLR LGGQELFCTV SIGIAVFPAD
GTDAATLLRH ADTAMALAKR EGRNNFQFYT HALTEAVFSR LNIETGLRHA LERDELRLHY
QPILDAASGR IAAMESLMRW QHPERGLVSP GVFIPVAEQS DLILALGRWA LVSACAQVRA
WSDAGLEPVP VSVNIPACHF RQPGFVEEVL GVVRETGVQP QSLIIELTES ALMEPVSLAE
ERIRRLRDTG VVVAIDDFGT GYSSLGYLQR FHVNYLKVDR SFVSGLPGDE NARAITEAVI
GVSHSLGLQV VAEGVETQAQ LDHLRATGCD KVQGYLTGRP VTAEVAATLL PGAGEKVISL
PG
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