Gene Tgr7_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_0541 
Symbol 
ID7317889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand- 
Start bp570794 
End bp571366 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content73% 
IMG OID643615426 
ProductTPR repeat-containing protein 
Protein accessionYP_002512625 
Protein GI220933726 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.555978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCGAGAC GCTGCGTTGA GCTGATCGCC GGGCTGGCCC TGCTGAGCCT GGTCGGCTGC 
GCCGGCGCGC CCCGCGCACC CGAGTCCGTG GCGGACCCGG CGGCTGCGCC GTTCGCCCGG 
GCCGTGGAAC TGATGCGCGC CGAACGCCAT GCCGAGGCGG CGGCCCTGCT GGGGCCCCTG 
GCCGAGGCCC ACCCGGAACT GCCCGGCGTG CACGTCAACC TGGGCATCGC CCGGGACCGG 
CTGGGCGATG AGGACGCGGC GGCGCAGGCC TGGCAGAACG CCCTGGCCGC GGAGCCGTCC 
CATGCCGCCG CCCTCAATCT GCTGGCGGTG CATCACCGGG AACAGGGCCG GTTCGCGGAG 
TCCCTCGCTC TCTACCAGCG CCTGATCGCC GCCCACCCGG AGCACGCGGA CGGTCATCTG 
AACCTGGGCA TCCTGTGCGA CCTGTACCTG CACGATCCCG CCTGCGCCCT GAACCACTAC 
CGCCGCTACC AGGCGCTCGC CGGGAGCGAG GATGAACAGG TGAGTTTCTG GATCGCCGAC 
CTGGAACGCC GCGTGCCGGA GGGCAACCGA TGA
 
Protein sequence
MSRRCVELIA GLALLSLVGC AGAPRAPESV ADPAAAPFAR AVELMRAERH AEAAALLGPL 
AEAHPELPGV HVNLGIARDR LGDEDAAAQA WQNALAAEPS HAAALNLLAV HHREQGRFAE 
SLALYQRLIA AHPEHADGHL NLGILCDLYL HDPACALNHY RRYQALAGSE DEQVSFWIAD 
LERRVPEGNR