| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0488 |
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| Symbol | |
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| ID | 7317672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 520801 |
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| End bp | 522858 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643615371 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002512572 |
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| Protein GI | 220933673 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCAGGA AGCGCGAAAG CCAGCGAATC ACACTGATCG GCGGCGTGCT ACTGGCTGCA
TTGACCCTGG TTTCTGGTTT CGCCGTCTAT GCTGTGATGC AGAGGCAGCT TGAAGCTGTT
CTGGTCAACA GCCTGCAATC CTCCCTGCAC AGCGACCGCC GCCTGTTCGA AACGGAGATC
CGCGGGAGCG TGGTCAATGC GTTAACGGTC TCCACCCGAC CCTTTGTGAT CCAGAACCTC
GCCCGCCTGC GCGAGGCGCC GGAAGATGCG TCGGCCGCGC ACAGCCTGCA GCGGCTGGTG
CGCAGGCTCG TCAAATCCCA GCAGCAGACC GCTGAGGCGA ACGCACGACT GAGAGATCTC
GAGGAGCGCT GGCGGTTTGC ACTGGACAGT GCCGGTGCGG GTGTCTGGGA CCTGGATCTT
TCCGCAGGCA AGATCCTCCT GTCCGTGCGC TGCAAGCACA TGCTGGGCTA CGAGGAGCAT
GAGATCGGCG CGAGTGCGGA GGAATGGCAG GCGCTGGTGC ACCGGGACGA TGCGCCGGCC
CTCATAGCCG CCTGCCAGCG GCTGGTCGAT GGCGAGGTGC AGAGTTTCAC CCATGAACAC
CGCAAGCGCT GCAAGGATGG CAGCTGGAAG TGGGTGCAGG CCCGGGGCAT GGTGGCCGCC
CGGGATGAGA ACGGCGCGCC TACGCGCCTG ATCGGCACGT ATATCGACAT CAGCGAGCGC
AAGCGCGCCG AGGAGATCAT CCAGCAGCAG GCCAACTTTG ATCCCTTGAC GAAACTCCCC
AATCGCCGTC TGTTCCTGGA TCGGCTCGAT CAGCAGATCG CAAAATGCCA GCGAACGGGC
GCTGCCCTTG CGCTGCTGCT CATCGATCTC GATGAATTCA AGGAGGTCAA CGATACCCTG
GGCCACGACG TCGGTGATGT GCTCCTGCAG GAAGCAGCCC GGCGCATCAG CGGCTGCATC
CGTGATACGG ATACGGTCGC CCGCCTGGGC GGAGACGAGT TCACGGTGAT CCTGTCCGAT
CTGACCGGCA AGGCCCACGT GGAGGAGATC GCGCAGAAGC TCATCTCCCG GGTGGCCGAG
CCGTACTACC TCCGCGAAGG GGTGGCTCAC ATCTCCGCCA GCATCGGCAT CACCCTGTAC
CCGGGCGACG CCGAGGACAT GGGCGAGCTG ATGAAGCATG CCGACCAGGC CATGTACTCG
GCCAAGAGGC TGGGCAGAAA CCGCTTCTGC TATTTCACCC ATGCCTTGCA GGAGGCGGCG
CAGAAGCGGC TCAGGCTGTC CAGGGAACTC AGGCAGGCGG TGAACCAGGG GCAGTTCGAG
GCCCATTTCC AGCCCATCGT GGAACTTGCC TCGGGGCGGA TCCAGAAGGC AGAGGCATTG
CTCCGCTGGC ACCATCCCGA GCGGGGTCTG GTTGGTCCGG CGGAATTCAT TCCCCTGGCG
GAGGATACCG GGCTCATCGA AGGGGTGGGT GACTGGGTGT TCAGGGAGGC GGTGCGGCGT
GCCAGGGTGT GGCGCGATCG CTTCGGCACG GATATCCAAG TCAGCGTGAA CATGTCCCCG
TTGCAGTTCC GGAGCGAGGG CGCGGAGCGG GTCGAGTCCT GGCTGTACCA CCTTGAGGAA
ATGGGTGTCA GGGGTGAGCA AATCGTCATC GAGATCACCG AAAACCTCCT GCTCCATGCC
CATGACGAAG TCACCAGGCA GCTGTTCCGG TTTCGCGACG CGGGCATCCA GATCGCCATC
GATGACTTCG GCACGGGCTA TTGCACGCTC TCCTACCTCA AGCAGTTCCC CATCGACTAC
CTGAAGATCG ATCGCAGTTT CGTGCGCAAC CTGGAAAACG ATCCGAACGA CGTGGCCCTG
TCCAAGGCCA TCATCGTCAT GGCGCACGAA CTGGGCCTGA AGGTGATCGC GGAGGGCGTG
GAAACCGAAG GGCAGCGCAG GCTGCTGTCT GATGCCGGCT GCGACTTCGC CCAGGGTTAT
CTGTTTGCCA GGGCCTTGCC GGCGGAAGAC TTCGAGGATC TGCTCAACGA CACGGGGCGG
ATGTTCTCGA TCGGTTAA
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| Protein sequence | MARKRESQRI TLIGGVLLAA LTLVSGFAVY AVMQRQLEAV LVNSLQSSLH SDRRLFETEI
RGSVVNALTV STRPFVIQNL ARLREAPEDA SAAHSLQRLV RRLVKSQQQT AEANARLRDL
EERWRFALDS AGAGVWDLDL SAGKILLSVR CKHMLGYEEH EIGASAEEWQ ALVHRDDAPA
LIAACQRLVD GEVQSFTHEH RKRCKDGSWK WVQARGMVAA RDENGAPTRL IGTYIDISER
KRAEEIIQQQ ANFDPLTKLP NRRLFLDRLD QQIAKCQRTG AALALLLIDL DEFKEVNDTL
GHDVGDVLLQ EAARRISGCI RDTDTVARLG GDEFTVILSD LTGKAHVEEI AQKLISRVAE
PYYLREGVAH ISASIGITLY PGDAEDMGEL MKHADQAMYS AKRLGRNRFC YFTHALQEAA
QKRLRLSREL RQAVNQGQFE AHFQPIVELA SGRIQKAEAL LRWHHPERGL VGPAEFIPLA
EDTGLIEGVG DWVFREAVRR ARVWRDRFGT DIQVSVNMSP LQFRSEGAER VESWLYHLEE
MGVRGEQIVI EITENLLLHA HDEVTRQLFR FRDAGIQIAI DDFGTGYCTL SYLKQFPIDY
LKIDRSFVRN LENDPNDVAL SKAIIVMAHE LGLKVIAEGV ETEGQRRLLS DAGCDFAQGY
LFARALPAED FEDLLNDTGR MFSIG
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