| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0245 |
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| Symbol | |
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| ID | 7316823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 265576 |
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| End bp | 268806 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643615130 |
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| Product | signal transduction protein containing a membrane domain an EAL and a GGDEF domain |
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| Protein accession | YP_002512331 |
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| Protein GI | 220933432 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACGGTT GGGTGGAGGG CCACCTCGGA CTGATCTACC AGGTCTATGG CCTGTCCTTT
TTCGTACTGG GTGTCACGGC CTTCCTGCTG CCGCGCCAGG ACGCCAATCT GCCCTTCTCC
CGACACCTGG GCTGGCTGGC GGCCTTCGGC ATGCTGCACG GCATCCTGGA GTTCACGGAA
TGGGTCCGGC TGCAGGAGGG TGCCGCCGAC GGGCTGATCC ACTCCGCTCA GCTGTTGCTG
TTCGTCTCCT TCATTCCCCT GCTGGAATTC GGCCGGCGCT GCATGGCGGA CCTGTGGCCC
ACAGTCTGGC TGGATCCACG CCTGATCTAC GGTGCGGCCG GGCTCGCGGT ACTGGGCCTG
GTTCTGTTGT CCACACAACC GCTCGAAGGC CTGGCCACCG GCGCGCGCTA CTTTCTCGGT
ACCCCCGGCG CCCTGCTCGC CGCCCTGGCC CTGTGGACGA GCCGCAAGCC CGCGCCACAT
CGTCTCGATA CCAGCGCCGG GTTTCGCGCC CAGCCTGCCT GGATCGGCAC CCTGGCGGGG
GCCCTGATGG TCTACGGCCT GTTGACGCCG TTTCTGACCG TCACGTCCCA AGGCCTGCCC
CCCTGGCTGC CCACCCAGTG GGACTTCCTG GCCATCACCG GCTTCCCGGT GCAGCTGGCT
CGCTCCCTGT GCGCCATCGC CGCGTGCATC GCCCTCATGG CCCTTGTCAG GCAGGCCGGC
AGCCTCAGCA ACGAGGACCT GCTCCGCGTA CTCGGCACCA TCGACGGCTT CGTCTATCGC
AGCAAGAACG ACCCCCAATG GTCCCTGGTC TATCTGGCCG GCAACGTGGA GGAACTGAGC
GGTTACCGTC CCATGGACTT CCTGGATCCC GAAGTGGTGA CCATGGGCTC CCTGACCCAT
CCCGAGGACC GGGACAGGGT CTGGCACGAA GTCCAGCAGG CCTTGAATCA AAGACGGTCG
TTTTCGCTTT CCTACCGCAT CGTCACCCGG GACGGCACGC CGCGCTGGGT CCAGGAGCGC
GGGCAGGGCA TCCATGACGA ACACGGGAAC CTGCTGTTCC TGCAGGGACA CGTGATAGAC
GCCAGCAGGC TGGTGGCGGC CAACGAGGAC CTGCGACATC AGCGCGCCGC CCTGGAGGCC
TTCAAGCACA CCCTGGACCT GACCCAGGAT TCGGTGTTCA TGTTCGATGC CGAGACCCTG
GAGTTCATCT ACGTCAACCG GGGTGCGATC AAGCAATTGG GCTACAGCGC GCAAGAACTG
TTCACCCTGC ACCCCTATGA CATCAAGCCG GAGTTTCCCG AACCGCGCTT CCGCCGTTTC
ATCGAGGTGC TGCGCACCGA GAAACGGGAC AGCCTGGTGT TCGAAACCCT GCACCGGACC
CGGGACGGCA GGGATCTGCA ACTGGAAGTC TCCCTGCAAT ACGTCGTCCT CCCGGATGAA
CGACCCCGCT ACGTGGCCAT CACCCGGGAC ATCAGCCAAC GCAAGGAACA GGAAAAGTCC
CTGCTCAAGG CACTCGGAGA CCTGCAGGTC TCCGAACGCC GCCAAACGGA ATTGCTGGCC
ATCACCCGGC GCGAACAAAG CCGCATGGCG GCGCTGCTCT CAGGCATGAG CATCGGCATC
CTGTTCGAGG ACACCAATGG CCGCGTGGAA TACGTCAATC CCGCCTTCCG CCGCATGTGG
GCCATCGGCG AGCCGGTGGA CCTCATCGGC CGCCCCAGCC GCGAGGTGCT GAAACACTCC
ACCCATCGCC TCGCCCGCCC GGACCACGCA TCCAGGCACA TCCTGCATGT GCTGGACACC
CACGAAATCA GCGAACGCTT CGAGGTGGAT CTCTACGACG GTCGGGTGCT CACCCAGCTC
TCCTACCCGG TCGCCGATCC CGACGGGCCC GTGCTCGGCC GGCTGTGGAT CTACGAGGAC
ATCACCCGCG AGCGCCAGAC CGCCCAGCAG CTGATCTACA TGGCCCAGCA CGATGCGCTG
ACGGGACTGT ACAACCGCCA TCGTTTCCAG GAACACCTGG ATCGCATGAT CAGCAGCGCC
CAGCGCAACG ACAGCCGCTT CGCCCTGCTG TACTTCGACC TGGACGAGTT CAAGTACATC
AACGACACCT TCGGCCACCG GGCCGGCGAC ACCGTGCTGG TGCGTGCCGC CGGCGAGGTT
TCGAGCCTGG TCCGCTCCGG AGAGGTGTTC GCGCGACTGG GTGGAGACGA GTTCGCCGTG
CTCGCGGAGA TACGCCATGA CGATGAACCC TCGCAACTGG CCGAGCGCAT CGCCCGCGCC
ATCTCCGCCA TCCCGTTCCG TTTCCGGGGC AGCAACCTGC GCCTGACCGC CAGCATCGGC
ATCGCCTTCT TCCCGGAACA CGGCGACAAC GTGGAGGACC TCGTCGCCCA CGCGGACACC
GCCATGTACC AGGCCAAGAG CAACGGCAAG AACACCTGGT CCCTGTACGA CCCCAGTCGC
AATCATTCCA AGGCCATGAT GGCGCGCATG ACCTGGCGCG GACGCATCGA CCAGGCCCTG
CGGGAGGAAA GCCTGGAGCT GCACTTCCAG GGCATCTACT CCACCGCCGA CGGGGAACTG
AGTCACGTGG AGACCCTGGT GCGCATGCGC GATCCCGCCG ACGGCGAACG CCTCATCATG
CCCGGCCAGT TCATCCCCGT GGCGGAGAAG ACCGGCCAGA TCCTGGAGAT CGACCGCTGG
GTGCTGCGCC AGAGCATCGG GCTCCTGGCG AAACATCCGA AACTGCGCGC GCTGGCGGTG
AACATCTCCG GACGCAGCTT CGATGAGCCC GGCCTGCCCC AGTACATCCA GGACCTGCTG
CAACGCCACG ATGTGGAGCC CAGGCGCCTG ATCGTGGAGC TGACCGAGAC CGCCGCCGTC
TCCGAGATGC AGGACGCCCA GCGTTTCATC GAGGCCCTGC ACCAGACCGG CTGCCTGATC
GGCCTGGATG ATTTCGGCTC CGGCTTCTCC ACCTTCGCCT ACCTGAAATA CCTGGGCGTA
CAGATCCTCA AGATCGACGG CATGTTCATC CGCGACCTGC CCAACAACCG GGACAATCAG
GCCTTCGTCA AGGCCATGAT CGACGTGGCC AAGGGCCTGG ACAAGCTCAC GGTGGCGGAG
TTCGTGGAGG ATGCCGAGAC GCTCGCCATG CTGCGCGAGT TCGGCGTGGA CATGGCCCAG
GGCTATCACC TGGACCGGCC TTCGGCGGAA CTGCCGCCGC AGTATCACTA G
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| Protein sequence | MNGWVEGHLG LIYQVYGLSF FVLGVTAFLL PRQDANLPFS RHLGWLAAFG MLHGILEFTE
WVRLQEGAAD GLIHSAQLLL FVSFIPLLEF GRRCMADLWP TVWLDPRLIY GAAGLAVLGL
VLLSTQPLEG LATGARYFLG TPGALLAALA LWTSRKPAPH RLDTSAGFRA QPAWIGTLAG
ALMVYGLLTP FLTVTSQGLP PWLPTQWDFL AITGFPVQLA RSLCAIAACI ALMALVRQAG
SLSNEDLLRV LGTIDGFVYR SKNDPQWSLV YLAGNVEELS GYRPMDFLDP EVVTMGSLTH
PEDRDRVWHE VQQALNQRRS FSLSYRIVTR DGTPRWVQER GQGIHDEHGN LLFLQGHVID
ASRLVAANED LRHQRAALEA FKHTLDLTQD SVFMFDAETL EFIYVNRGAI KQLGYSAQEL
FTLHPYDIKP EFPEPRFRRF IEVLRTEKRD SLVFETLHRT RDGRDLQLEV SLQYVVLPDE
RPRYVAITRD ISQRKEQEKS LLKALGDLQV SERRQTELLA ITRREQSRMA ALLSGMSIGI
LFEDTNGRVE YVNPAFRRMW AIGEPVDLIG RPSREVLKHS THRLARPDHA SRHILHVLDT
HEISERFEVD LYDGRVLTQL SYPVADPDGP VLGRLWIYED ITRERQTAQQ LIYMAQHDAL
TGLYNRHRFQ EHLDRMISSA QRNDSRFALL YFDLDEFKYI NDTFGHRAGD TVLVRAAGEV
SSLVRSGEVF ARLGGDEFAV LAEIRHDDEP SQLAERIARA ISAIPFRFRG SNLRLTASIG
IAFFPEHGDN VEDLVAHADT AMYQAKSNGK NTWSLYDPSR NHSKAMMARM TWRGRIDQAL
REESLELHFQ GIYSTADGEL SHVETLVRMR DPADGERLIM PGQFIPVAEK TGQILEIDRW
VLRQSIGLLA KHPKLRALAV NISGRSFDEP GLPQYIQDLL QRHDVEPRRL IVELTETAAV
SEMQDAQRFI EALHQTGCLI GLDDFGSGFS TFAYLKYLGV QILKIDGMFI RDLPNNRDNQ
AFVKAMIDVA KGLDKLTVAE FVEDAETLAM LREFGVDMAQ GYHLDRPSAE LPPQYH
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