| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0225 |
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| Symbol | |
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| ID | 7316803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 242769 |
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| End bp | 244736 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643615110 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002512311 |
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| Protein GI | 220933412 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCCAT GGCTTGGCCG GGTGGTGGTC CTGGTGGCGC TGTTGCTGGC GCAGCCGGCA
CTGGCCCAGG AAAACGACAC CGTGGTGCTG AACTTCAAGG AGGCCGATAT CCAGGCCCTG
ATCAGCATGG TCTCGGAGCA GACCGGCACC AACTTCGTGG TGGATCCCCG GGTGCGTGGC
CGCGTCACGG TGATCTCCGG CGCGCCGGTC AAGCGCGAGG AACTCTACCG GATTTTCCTC
TCAGTGCTGC GCATCCACGG TTTTGCCGCC GTGCCCGGCG ACGGCGTGGT GAAGCTGATC
CCCGAGGTGC AGGCCAAGCA GACCGAGGTG CCCACGGTCG CGCCGCCGCG CACCGGCCGG
GGGGATGAAT ACGTCACCCG GGTGATCAAG GTGGATCACG TGGATGCCGC CCAGCTGGTC
CCCATCCTGC GTCCCCTGGT GCCCCAGAGC GGTCACCTGG TGGCCTCCGC CGAATCCAAC
GTGCTGATCG TCTCCGACAG CGCCGCCAAT GCCGAGCGCA TCGCCGAACT GGTGGCGCGC
ATCGACCTGG ACGGCAGGGA GGATCTGGAG ATGATCCCCC TGCGTCACGC CTCTGCCGCC
GAGGTGGTGC GCGTACTCAC CAGCCTGCAT GGCGGCGGTG AGGGTCGCCG TGGCCAGATG
CAGATGGTGG CGGACGAGCG CACCAACAGC ATCCTGCTGG GCGGTGATCC CAAGCGCCGT
GTGGCTATCC GCGCCATGAT CTCCCACCTG GATACCCGCA TCGAGGGCGG CAATACCCAG
GTGGTCTACC TGCGCTATGC CAACGCCATG GACATGGCGG AAGTGCTCAA GGGGCTGGTG
CAGGGCATGG ATGTGCCCGG AGCAGATGGC CGCGAGGGAC GGGGCGGGAT CAACATCCAG
GCCCACGAGA GCACCAATGC CCTGGTGCTG AGCGGGCCGC CGGACGCGGT GCGCGACCTG
CGCGCCGTGA TCAACCAGCT GGACGTGCGC CGCGCCCAGG TGCTGGTGGA GGCGGTGATC
GCCGAGGTCT CCTACGACAA GATCACCGAG CTGGGTGTGC AGTGGGGCGT GGGCAATCCC
AACAGCGGCG TGGGCGTGAT CAATTTCAAT CGCAGCGGTT CGGGCATCAT CGGTGTCGCG
GGTGGCATTG ACGCCTTCCT GCGCGGCGCG GTGGCGACTC CGCCCAACCT GGGCGACGGC
GCCTTCCTGG GTGGTATCGG CACCTCCGGC TCCACCACCA TCGCCGCGCT GGTGCGCGCC
CTGGCCGGCG ACTCCTCCAG CAACATCCTC TCCACCCCGA GCCTGATGAC CATGGACAAC
GAGGAGGCGG AGATCGTGGT GGGCCAGAAC GTGCCCTTCA TCGCCGGCCG TTCCATCGAG
CAGTCCGGCC AGGCCTTCGA CACCATCCAG CGCCAGGACG TGGGTGTGAA ACTGCGCATC
AAGCCCCAGA TCAACGAAGG CAATTCCATC CGCCTGGAGA TCGAACAGGA GGTCTCCCAG
GTGGCGGCCG GCGCCACGGC CGCCGCGGAT CTGGTCACCA ACAAGCGCAG CCTGCGCACC
ATCGTCATGG TGGACGACGG CGAGATGGTG GTGCTGGGCG GCCTGATCGA CGACGTGCTG
GTGCAGACCC AGGACCGGGT GCCGGGCCTG GGTTCCATTC CCGGCGTGGG TCGTCTGTTC
CGCTACGACA CCGCGCGCAA GGAAAAACGC AACTTGATGG TGTTCCTGCA TCCGGTGATC
GTGCGTGATT CCGCCGTGCA GGAGCATCTG ACCGCCTCCA AGTATTCCTA CATCCGCGCG
GAACAGCTCG CCGCACGGGA GCGGGGCGCA CTGTTCATGT CCCGTGACGT GGCGCCCGTG
CTGCCGCCCT GGGAGGAACT GCTGAATCTG CCGCCACCCT ACGAGGCCTC CAACGCCCCC
GCTGCGGGCA ACACCATTGA TGTGAGGCCG CCACCGGCCC GCCCGTGA
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| Protein sequence | MRPWLGRVVV LVALLLAQPA LAQENDTVVL NFKEADIQAL ISMVSEQTGT NFVVDPRVRG
RVTVISGAPV KREELYRIFL SVLRIHGFAA VPGDGVVKLI PEVQAKQTEV PTVAPPRTGR
GDEYVTRVIK VDHVDAAQLV PILRPLVPQS GHLVASAESN VLIVSDSAAN AERIAELVAR
IDLDGREDLE MIPLRHASAA EVVRVLTSLH GGGEGRRGQM QMVADERTNS ILLGGDPKRR
VAIRAMISHL DTRIEGGNTQ VVYLRYANAM DMAEVLKGLV QGMDVPGADG REGRGGINIQ
AHESTNALVL SGPPDAVRDL RAVINQLDVR RAQVLVEAVI AEVSYDKITE LGVQWGVGNP
NSGVGVINFN RSGSGIIGVA GGIDAFLRGA VATPPNLGDG AFLGGIGTSG STTIAALVRA
LAGDSSSNIL STPSLMTMDN EEAEIVVGQN VPFIAGRSIE QSGQAFDTIQ RQDVGVKLRI
KPQINEGNSI RLEIEQEVSQ VAAGATAAAD LVTNKRSLRT IVMVDDGEMV VLGGLIDDVL
VQTQDRVPGL GSIPGVGRLF RYDTARKEKR NLMVFLHPVI VRDSAVQEHL TASKYSYIRA
EQLAARERGA LFMSRDVAPV LPPWEELLNL PPPYEASNAP AAGNTIDVRP PPARP
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