| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0117 |
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| Symbol | |
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| ID | 7316123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 124996 |
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| End bp | 127533 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643615006 |
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| Product | signal transduction protein containing a membrane domain an EAL and a GGDEF domain |
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| Protein accession | YP_002512207 |
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| Protein GI | 220933308 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.734428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCATC GCATCCTCGT GGTAGAGGAG TCTTCCACGC TTCGCTACAT CCTGTGCCGT
GGCCTGGAGC GCCATGGACT GGAACCGGTC GCCTGCGAAC ACACGCAGGC GGCTTTGTCG
TGCCTCGATG ACAGCCACTG CCTGGATGGC CTCGCGGGCA TCCTGCTGGG CTGGCCCGGC
ATCCCCGGGG ACCGGGACCA TGAACTCCTC GATCGCCTGA ACGCCCCCGA CTTCAGCCAC
CTGGCCGTGG TGCTGCTGGT GCCCGAGATG CAGTCACGGC TGATGGCCTG GGCCCAGGGG
CGGCGCCTTT CCGCCGTGGT GCCCTGGGAC GAGCATGGCG AGGCGGCCGG TACCCTGGCC
GTGCTGCTGA AACCCGTCCA GGAGACCCGC GAGTCCCCCA ACCGTGACAT CCGCGTCCTG
CTGGTGGACG ACTCCCCCAG TGTGCGCTTC TTCTACCAGC GGCTGCTCAC CCGCGACGGC
TACGAGGTGA AGGCCTGCGC CGATCCGGCC AGCGCCTTTG AACTGGCCTG CCGTGAACAT
TTCGACCTGG CGGTGGTGGA CTACTTCATG CCCGGGGAGA ACGGCGACCG CCTGTGTACC
CGGCTCAAGT CAGACCCTCG CAGCCGCCAC ATGGAGCTGG CGGTCCTCAC CGGCGTCTAC
AACGACGAGG TGATCCGCAA CTGCCTGGAT GCCGGCGCCG TGGAGTGCCT GTTCAAGAAC
GAGGCGGAAC ACCTGTTCCT GGCCCGCATC GGCGCCCTGT GGCGCTCCAT CCGCGCCCAC
AAGGCAGTGG CCCTGAGCCA CCAGCGCCAG GCCGCCATCC TGGAATCGGC GGGCGACGGC
ATCTACGGGG TGGACCGGGA AGGCCGCATC ACCTTCATCA ACCCCGCCGC CTGCCGGATC
CTGGGCATCC GCGACCCGGA CGAGGTGCTG GGCCAGTCGG CCCACGTGCT GTTCCACGGC
ATCAATCGGC AGGGGCGCCC CGTGCCGCCG GAACGCTGCC CGCTGAGCCA GGCCTACGCC
AGCGGCGAGG TCATGGGGGG CTGGGAGACG GTGTTCCGGC ATCGCTCCGG ACGACTGATC
CCCGTGGCCG GCAGCATCCA CCCCCTGAGC GACGCGTTCC GCGAATCGGG CTCGGTGGTG
GCCTTCCAGG ATGTCTCCGA GCGCAATGCC ATGGAGGCCC AGCTGCACTG GCAGGCGGAG
CACGACGAAC TCATCGGCCT GTACAACCGG CGCTACCTGG AACGGTCCCT GGAGGCGGAG
CAGGCGCGCT GCCAGGCCAC CGGCCATCGC AGCGCCCTGC TGCTGCTGGA CCTGGACCGC
TTCAAGTACA TCAACGACAC CGCCGGCCAC CCGGTGGGCG ACAGCCTGCT GGTGGAGGTC
TCCCACCGGC TGCGGGCCCA CCTGGGCGAA GGCCCGGTGC TGGCGCGCCT GGGCGGTGAC
GAGTTCGCCG TAATCCTGCC CCAGACCGAC CCGCAGGCGC TGGAGAAGCT CAGCGGCGGT
CTGCGGCGGC TGCTGCACGA GAGCACCTTC CGGGTGGACG AACGCAACTA CCGGCTCAAC
CTGAGCATCG GCGCCGCCTG GCTGGGCAAC GCCCGGGAGA CCGCGGCCGA CGTGCTGGCC
AGTGCCGACA TCGCCTGCCA CGCCGCCAAG CGCGCCGGGC GCAACCAGTT CCATGTCTAC
GATCCGAACC GGGACGAGCG CGCCTTCATG GGCCGGGACC TTGCCTGGGC CGACCGGCTG
CGGGAGGCCC TGCAGCAGAA CCAGTTCCAG CTCCATTACC AGCCCATCCT GCCGGTCATG
CCGCAGACGA CCAGCCGGGA ACACTACGAG GTGCTGCTGC GCCTGGAGAT CGCCCCGCAG
GTGCTCACCC TGCCCGGCGA CTTCATCCCG GTGGCGGAGC GCTTCGGCCT GATGCCGGAG
ATCGACGCCT GGGCCCTGGA CCGGGCCCTG GCTGTACTGC GCGACCTGCA CGGCCAGGGC
CGCGAAGTGG TGTTCAACCT CAACCTCTCG GGACGCACCC TGAGCGACAT CCCCACCCTG
GAGCGCATCC GCGACCGGGT GCTCGGCTCA GGACTCGATC TCACCTGCCT GGTGTTCGAG
ATCACCGAGA CCTGCGCCAT CCTCAACCTG GCGGCGGCGC GCGCCTTCAT CGACCGGCTG
CGGGCACACG GGGTGCGCTT CGCCCTGGAC GATTTCGGCA CCGGCTTCTG CTCCATGTCG
CACCTGAAGC AGCTGCCCGT GGACGTGGTC AAGTTCGACG GCCAGTTCGT GCGCGAACTG
CACCTGGATG CCACCGACCG GGCCATGGTC GCGGCCATGA ACGACATCGT GCATGCCATG
GGCCTGAAGA GCGTGGCCGA ATACGTGGAA GGCCCCGAGG TGCTGGCCTG CCTGCAGGCC
ATGGGGGTGG ACTATGTTCA GGGCTTCTAC CTGGGCCACC CTGTGGAGTC ACCCACGCCA
CCCGCCAGGG GTGTCGAGAT GCAGCCCGGG GCGGCTCCCG GCCGGGTCAT TGCGGCGCCG
AAACGCCCGT TGCACTGA
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| Protein sequence | MTHRILVVEE SSTLRYILCR GLERHGLEPV ACEHTQAALS CLDDSHCLDG LAGILLGWPG
IPGDRDHELL DRLNAPDFSH LAVVLLVPEM QSRLMAWAQG RRLSAVVPWD EHGEAAGTLA
VLLKPVQETR ESPNRDIRVL LVDDSPSVRF FYQRLLTRDG YEVKACADPA SAFELACREH
FDLAVVDYFM PGENGDRLCT RLKSDPRSRH MELAVLTGVY NDEVIRNCLD AGAVECLFKN
EAEHLFLARI GALWRSIRAH KAVALSHQRQ AAILESAGDG IYGVDREGRI TFINPAACRI
LGIRDPDEVL GQSAHVLFHG INRQGRPVPP ERCPLSQAYA SGEVMGGWET VFRHRSGRLI
PVAGSIHPLS DAFRESGSVV AFQDVSERNA MEAQLHWQAE HDELIGLYNR RYLERSLEAE
QARCQATGHR SALLLLDLDR FKYINDTAGH PVGDSLLVEV SHRLRAHLGE GPVLARLGGD
EFAVILPQTD PQALEKLSGG LRRLLHESTF RVDERNYRLN LSIGAAWLGN ARETAADVLA
SADIACHAAK RAGRNQFHVY DPNRDERAFM GRDLAWADRL REALQQNQFQ LHYQPILPVM
PQTTSREHYE VLLRLEIAPQ VLTLPGDFIP VAERFGLMPE IDAWALDRAL AVLRDLHGQG
REVVFNLNLS GRTLSDIPTL ERIRDRVLGS GLDLTCLVFE ITETCAILNL AAARAFIDRL
RAHGVRFALD DFGTGFCSMS HLKQLPVDVV KFDGQFVREL HLDATDRAMV AAMNDIVHAM
GLKSVAEYVE GPEVLACLQA MGVDYVQGFY LGHPVESPTP PARGVEMQPG AAPGRVIAAP
KRPLH
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