Gene Tgr7_0117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_0117 
Symbol 
ID7316123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp124996 
End bp127533 
Gene Length2538 bp 
Protein Length845 aa 
Translation table11 
GC content69% 
IMG OID643615006 
Productsignal transduction protein containing a membrane domain an EAL and a GGDEF domain 
Protein accessionYP_002512207 
Protein GI220933308 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.734428 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCATC GCATCCTCGT GGTAGAGGAG TCTTCCACGC TTCGCTACAT CCTGTGCCGT 
GGCCTGGAGC GCCATGGACT GGAACCGGTC GCCTGCGAAC ACACGCAGGC GGCTTTGTCG
TGCCTCGATG ACAGCCACTG CCTGGATGGC CTCGCGGGCA TCCTGCTGGG CTGGCCCGGC
ATCCCCGGGG ACCGGGACCA TGAACTCCTC GATCGCCTGA ACGCCCCCGA CTTCAGCCAC
CTGGCCGTGG TGCTGCTGGT GCCCGAGATG CAGTCACGGC TGATGGCCTG GGCCCAGGGG
CGGCGCCTTT CCGCCGTGGT GCCCTGGGAC GAGCATGGCG AGGCGGCCGG TACCCTGGCC
GTGCTGCTGA AACCCGTCCA GGAGACCCGC GAGTCCCCCA ACCGTGACAT CCGCGTCCTG
CTGGTGGACG ACTCCCCCAG TGTGCGCTTC TTCTACCAGC GGCTGCTCAC CCGCGACGGC
TACGAGGTGA AGGCCTGCGC CGATCCGGCC AGCGCCTTTG AACTGGCCTG CCGTGAACAT
TTCGACCTGG CGGTGGTGGA CTACTTCATG CCCGGGGAGA ACGGCGACCG CCTGTGTACC
CGGCTCAAGT CAGACCCTCG CAGCCGCCAC ATGGAGCTGG CGGTCCTCAC CGGCGTCTAC
AACGACGAGG TGATCCGCAA CTGCCTGGAT GCCGGCGCCG TGGAGTGCCT GTTCAAGAAC
GAGGCGGAAC ACCTGTTCCT GGCCCGCATC GGCGCCCTGT GGCGCTCCAT CCGCGCCCAC
AAGGCAGTGG CCCTGAGCCA CCAGCGCCAG GCCGCCATCC TGGAATCGGC GGGCGACGGC
ATCTACGGGG TGGACCGGGA AGGCCGCATC ACCTTCATCA ACCCCGCCGC CTGCCGGATC
CTGGGCATCC GCGACCCGGA CGAGGTGCTG GGCCAGTCGG CCCACGTGCT GTTCCACGGC
ATCAATCGGC AGGGGCGCCC CGTGCCGCCG GAACGCTGCC CGCTGAGCCA GGCCTACGCC
AGCGGCGAGG TCATGGGGGG CTGGGAGACG GTGTTCCGGC ATCGCTCCGG ACGACTGATC
CCCGTGGCCG GCAGCATCCA CCCCCTGAGC GACGCGTTCC GCGAATCGGG CTCGGTGGTG
GCCTTCCAGG ATGTCTCCGA GCGCAATGCC ATGGAGGCCC AGCTGCACTG GCAGGCGGAG
CACGACGAAC TCATCGGCCT GTACAACCGG CGCTACCTGG AACGGTCCCT GGAGGCGGAG
CAGGCGCGCT GCCAGGCCAC CGGCCATCGC AGCGCCCTGC TGCTGCTGGA CCTGGACCGC
TTCAAGTACA TCAACGACAC CGCCGGCCAC CCGGTGGGCG ACAGCCTGCT GGTGGAGGTC
TCCCACCGGC TGCGGGCCCA CCTGGGCGAA GGCCCGGTGC TGGCGCGCCT GGGCGGTGAC
GAGTTCGCCG TAATCCTGCC CCAGACCGAC CCGCAGGCGC TGGAGAAGCT CAGCGGCGGT
CTGCGGCGGC TGCTGCACGA GAGCACCTTC CGGGTGGACG AACGCAACTA CCGGCTCAAC
CTGAGCATCG GCGCCGCCTG GCTGGGCAAC GCCCGGGAGA CCGCGGCCGA CGTGCTGGCC
AGTGCCGACA TCGCCTGCCA CGCCGCCAAG CGCGCCGGGC GCAACCAGTT CCATGTCTAC
GATCCGAACC GGGACGAGCG CGCCTTCATG GGCCGGGACC TTGCCTGGGC CGACCGGCTG
CGGGAGGCCC TGCAGCAGAA CCAGTTCCAG CTCCATTACC AGCCCATCCT GCCGGTCATG
CCGCAGACGA CCAGCCGGGA ACACTACGAG GTGCTGCTGC GCCTGGAGAT CGCCCCGCAG
GTGCTCACCC TGCCCGGCGA CTTCATCCCG GTGGCGGAGC GCTTCGGCCT GATGCCGGAG
ATCGACGCCT GGGCCCTGGA CCGGGCCCTG GCTGTACTGC GCGACCTGCA CGGCCAGGGC
CGCGAAGTGG TGTTCAACCT CAACCTCTCG GGACGCACCC TGAGCGACAT CCCCACCCTG
GAGCGCATCC GCGACCGGGT GCTCGGCTCA GGACTCGATC TCACCTGCCT GGTGTTCGAG
ATCACCGAGA CCTGCGCCAT CCTCAACCTG GCGGCGGCGC GCGCCTTCAT CGACCGGCTG
CGGGCACACG GGGTGCGCTT CGCCCTGGAC GATTTCGGCA CCGGCTTCTG CTCCATGTCG
CACCTGAAGC AGCTGCCCGT GGACGTGGTC AAGTTCGACG GCCAGTTCGT GCGCGAACTG
CACCTGGATG CCACCGACCG GGCCATGGTC GCGGCCATGA ACGACATCGT GCATGCCATG
GGCCTGAAGA GCGTGGCCGA ATACGTGGAA GGCCCCGAGG TGCTGGCCTG CCTGCAGGCC
ATGGGGGTGG ACTATGTTCA GGGCTTCTAC CTGGGCCACC CTGTGGAGTC ACCCACGCCA
CCCGCCAGGG GTGTCGAGAT GCAGCCCGGG GCGGCTCCCG GCCGGGTCAT TGCGGCGCCG
AAACGCCCGT TGCACTGA
 
Protein sequence
MTHRILVVEE SSTLRYILCR GLERHGLEPV ACEHTQAALS CLDDSHCLDG LAGILLGWPG 
IPGDRDHELL DRLNAPDFSH LAVVLLVPEM QSRLMAWAQG RRLSAVVPWD EHGEAAGTLA
VLLKPVQETR ESPNRDIRVL LVDDSPSVRF FYQRLLTRDG YEVKACADPA SAFELACREH
FDLAVVDYFM PGENGDRLCT RLKSDPRSRH MELAVLTGVY NDEVIRNCLD AGAVECLFKN
EAEHLFLARI GALWRSIRAH KAVALSHQRQ AAILESAGDG IYGVDREGRI TFINPAACRI
LGIRDPDEVL GQSAHVLFHG INRQGRPVPP ERCPLSQAYA SGEVMGGWET VFRHRSGRLI
PVAGSIHPLS DAFRESGSVV AFQDVSERNA MEAQLHWQAE HDELIGLYNR RYLERSLEAE
QARCQATGHR SALLLLDLDR FKYINDTAGH PVGDSLLVEV SHRLRAHLGE GPVLARLGGD
EFAVILPQTD PQALEKLSGG LRRLLHESTF RVDERNYRLN LSIGAAWLGN ARETAADVLA
SADIACHAAK RAGRNQFHVY DPNRDERAFM GRDLAWADRL REALQQNQFQ LHYQPILPVM
PQTTSREHYE VLLRLEIAPQ VLTLPGDFIP VAERFGLMPE IDAWALDRAL AVLRDLHGQG
REVVFNLNLS GRTLSDIPTL ERIRDRVLGS GLDLTCLVFE ITETCAILNL AAARAFIDRL
RAHGVRFALD DFGTGFCSMS HLKQLPVDVV KFDGQFVREL HLDATDRAMV AAMNDIVHAM
GLKSVAEYVE GPEVLACLQA MGVDYVQGFY LGHPVESPTP PARGVEMQPG AAPGRVIAAP
KRPLH