| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0094 |
|---|
| Symbol | |
|---|
| ID | 7316100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 101262 |
|---|
| End bp | 102617 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643614984 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002512185 |
|---|
| Protein GI | 220933286 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGAAG ACGAGCAGAG GAAGCTGAAG TACCTGGACG TGATCCGCGA GCTGGAGCGC
GAGCTGGACC AGCGCCGCGA GGCCGAGACC GCCCTGCGCA AGCTCGCCGA GCGACTGGGC
CGCTGTGCCC AGGGCCGTTC CCCGGTCCTG GACCAGGCCC TCGGCGAGAT CATCTCATCC
CTCGGCACCC AGCTGGAGCC TGCCCGGGTG GAGGCACTGA CCGCGCGCCT GCAGACGGCG
CTCAGGGATG TGGATCTTCC CGATGCACCG CCATCGTCTT CCCTGGACGA TGCCCCTGAC
CCCTCACGGG CCGCCACCGC GGCCCCGACG GCATTCCTCG AAGCCCTGCA GGATCGTCTG
CCGGCGGTGC CCGGCCTGCG CGGCGAACTG GAGAGCCTGA TCGAACGCCT GGAGCGGGAT
CAGGCGCCGG CGGACTGGGG GCTGATGCTG AACGGCGTGG CCAATGTGCT CAAGGAGCAA
TGCCTGCGCG CCCAGCGGGA ACGCCACGAG CTGGAATCCT TCCTCAAGGA GATCACCGAC
CGTCTGGGCG AGTTCGACGC CTACCTGACC GGACAGAACA ACGACATGGA TGCGTCGCGA
CAGGAAGGAG TGTCGCTGGA GACCCGCATC CAGGGCGAGG TGCGCGAGCT GCAGACGGGC
ATGGCCCGGG TGGGCAGCCT GGACGAACTG CGCACCATGG TCTCCCTGCG CCTGGATGCC
ATCGGCGATC ACGTACGCAG CTTCCGGGAG GCCGATGAGC GTCGCTGCGA AGACTACCGC
ACCCGGGCCG AGCGCATGCG CGCACGCATC GTGCAGCTGG AGCATGAGGC CCAGGGTCTG
CGCCGCACCA TGGATGACGA GCGCAAGCAG GCGCTCATCG ATCAGCTCAC CGGCGTGCCC
AACCGCCAGG CCTTCGACGA GCGTCTCGCC CAGGAATACA GTCGCTGGAA ACGTTTCAAC
ACGCCGCTGG CGCTGATCAT GTGGGACGTG GATCGCTTCA AGCTCATCAA CGACTCCTAT
GGCCACAAGG CGGGTGACAA GGTGATCCGC GCCGTGGCGC AGAAGCTCAA GGAGCGCATC
CGGGAAACCG ACATGGTGGC CAGATACGGC GGAGAGGAGT TCGTCATGCT GCTCACCGGC
GCAAGCGGTC AGGATGCGCT GGCCATCGCT GAAAAGATCC GCGCCGAGAT CGCCGGACTC
GGTTTTCATT TCCGCGGCGA GCGCGTCCCC ATCACCATCT CCGCCGGCAT CGCCCTGTTC
GCCGAGGGAG ACACCCCGGA GACCGCCTTC GACAATGCCG ACCGCGCCCT GTACGAGGCG
AAGAACACCG GACGCAACCG CTGCGTGTTG CATTGA
|
|---|
| Protein sequence | MSEDEQRKLK YLDVIRELER ELDQRREAET ALRKLAERLG RCAQGRSPVL DQALGEIISS
LGTQLEPARV EALTARLQTA LRDVDLPDAP PSSSLDDAPD PSRAATAAPT AFLEALQDRL
PAVPGLRGEL ESLIERLERD QAPADWGLML NGVANVLKEQ CLRAQRERHE LESFLKEITD
RLGEFDAYLT GQNNDMDASR QEGVSLETRI QGEVRELQTG MARVGSLDEL RTMVSLRLDA
IGDHVRSFRE ADERRCEDYR TRAERMRARI VQLEHEAQGL RRTMDDERKQ ALIDQLTGVP
NRQAFDERLA QEYSRWKRFN TPLALIMWDV DRFKLINDSY GHKAGDKVIR AVAQKLKERI
RETDMVARYG GEEFVMLLTG ASGQDALAIA EKIRAEIAGL GFHFRGERVP ITISAGIALF
AEGDTPETAF DNADRALYEA KNTGRNRCVL H
|
|---|
| |