| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0076 |
|---|
| Symbol | |
|---|
| ID | 7316726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 74404 |
|---|
| End bp | 75738 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643614966 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002512167 |
|---|
| Protein GI | 220933268 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC CGCGCCGGCG TCTGTGCCGG TTTGGCATTC GTCAGAAGGT GGTGCTCGTG
TTGCTCACGG TGCTGCTCAC GGCCCTGTCC GTGAGCGGCT GGCTGGTGCT GCGCGACATG
GAGCGCAACG TGCTCAGCGA GACCGAGCGG CGCGGCGTGG AGATGGCGGA ATACCTGTCC
CGGTCCCTGG CCTACAGCGT GGTGGGCTAC GACTACCACA CCATCCAGTT GCTGCTGAAC
CAGGTTGTCC AGACCGGTGA CGTGGTGCAT GTGCGCGTGC TCAGCGACCG GGGCAACACC
ATGGCCGAGG TGGCCCATCC GGACCGGGAG GCCGTGGAGC GGGTGGGCTT CGAGCGCCCG
GTGCGCCTCA ATGACGGCAC GGTGGTGGGC AACCTGGAGC TGGAGCTCAG CATCGAGCCC
ATCGTGGCGC AGCTGGCTGA ACAGAAAGAG TCCCTCATCA AGCGCGAGGT GCTGGTCATC
CTGCTCATCG CCCTGGGCGA GTTCCTGGTG CTGTCCTGGA TCATCATCGG CCCGCTCACC
CGGGTCTCCC GGGCCCTGGA ATCCAACGTG GACGAGAACG GCGTGATCCT GCGTGACATC
CCGGTGGATT CCCGGGACGA GATCGGCGAG CTGGCGCGGC GCTTCAACGA GATGCGTGCC
CAGCTCAATG CCGCCAACCA GAAGCTCCAT GGCCGGGTGG AGGCCGCCGA CCGGGAGCTC
AAGGAGGCCT ACCAGAAGCT TCTGGAGCAG TCCGCCGCCC TGCAGCACTC CAACCTGGAA
CTGGAGCGCC TGAGCCTCAC TGACCCGCTC ACCGGGCTGG GCAACCGGCG TGCCTTCGAC
CAGAACATCG AGGCCGACAT GGCACTGTTC CGCCGCCATG GCGATATCAG CAGCCTGCTG
GTGCTGGACC TGGACTGTTT CAAGGGTCTC AACGACACCC ACGGCCACGA CATCGGCGAC
CTGGTGCTGT GCCAGTTTGC CGACGTGCTG CAGGGTCATG CCCGGGAAAC GGATGAAGTG
TGCCGTCTGG GGGGCGAGGA GTTCGCCGTG TTCCTGCGCC GGGCCGACGA GGACGGCGCC
ATGGCCATGG CGGAGAAGCT GCGCGAAGCA GTGGAGGCGA TGGTGGTCAA CGTGGACGAC
GCGCTCAAGA TCAGCGTCAC CGTCAGCATC GGTGTCGCCA CCCTGTCCAC CCGCCTGCGC
ATCACCTCGG CACTGGCCCT CTACAAGGCC GCGGACCAGG CCATGTACGC CAGCAAGCAG
GCGGGCCGCA ACCGGGTCAC CCACTACGAC AGCCTGATCG CCGAGTCTCT GACGCCTGCA
ACGCACATTG CCTGA
|
|---|
| Protein sequence | MNRPRRRLCR FGIRQKVVLV LLTVLLTALS VSGWLVLRDM ERNVLSETER RGVEMAEYLS
RSLAYSVVGY DYHTIQLLLN QVVQTGDVVH VRVLSDRGNT MAEVAHPDRE AVERVGFERP
VRLNDGTVVG NLELELSIEP IVAQLAEQKE SLIKREVLVI LLIALGEFLV LSWIIIGPLT
RVSRALESNV DENGVILRDI PVDSRDEIGE LARRFNEMRA QLNAANQKLH GRVEAADREL
KEAYQKLLEQ SAALQHSNLE LERLSLTDPL TGLGNRRAFD QNIEADMALF RRHGDISSLL
VLDLDCFKGL NDTHGHDIGD LVLCQFADVL QGHARETDEV CRLGGEEFAV FLRRADEDGA
MAMAEKLREA VEAMVVNVDD ALKISVTVSI GVATLSTRLR ITSALALYKA ADQAMYASKQ
AGRNRVTHYD SLIAESLTPA THIA
|
|---|
| |