| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0034 |
|---|
| Symbol | |
|---|
| ID | 7316684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 33276 |
|---|
| End bp | 35696 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643614924 |
|---|
| Product | signal transduction protein containing a membrane domain an EAL and a GGDEF domain |
|---|
| Protein accession | YP_002512125 |
|---|
| Protein GI | 220933226 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGACA ATCAGGTGCA ATTGGCCGAA AGACCACACT CGCCGGTCTT CGCGGCCCGT
TCCCGCAGCA CCATCCTGGT CGGTTTCGGC ATCGTGCTGT GCCTCATGGC GATCATGATC
GTGCTGGGAC TCAGCCGCAT GGCCCACGTG CAGGACCGGC TGGAACGCAT CGTCCACGAG
CACAACGTCA AGACCGAGCT GCTGGGCAAC ATGCGCAATG CCGCCCGGGA ACGCTCCGTG
ACCCTCCTGC GCCTGGCCAT CACCACGGAC CCCTTCGATC TGGACGCGGG CATCATGGAC
TTCCGCCAGG AGGCCTCGCA ATTCATGGTC AACCGCGGCC GCCTGACCCA GATGAGCCTG
AGCGCGCGGG AAGAGGCCCT GCTGGAGGAT TCCCGGGGCC TGACCGTGCG CGCGGTGCAG
GCCCAGGAGG CGGTGCTCGA GCACATCCTG AACGGCGAGG CCGAGCACGC CAACCGGGTG
CTGCTGGAAC AGGCCATCCC CTTGCAGAAT GCCGTGCTCG CCAACCTCGA CGCCCTGCTG
GCGCTGCAGC GGGAAGCGGG CGAAACCATG GTCGAGGAGG CTGCCGCGCG CTACCGCTCC
GCCGTGATCC TGATGAGCCT GCTGGGGCTG GCGGCGCTGC TGCTGGGCGC ACTGGTGGGC
CGAACGGTGG GCCTGCGCAC GGCCAGGGTG GAAGCCGATC TCTATCGGGA GAAGGAACGG
GCCCAGGTGA CCCTGCACGC CATCGGCGAC GCGGTGATCA CCACCGACAC CCAGGGCCTG
GTGGATTACC TGAACCCGGT GGCCGAACAC CTCACCGGCT GGCGCAATCA CCTGGCCCGC
GGCCGTTCCC TGGCGGAGGT GTTTCGCACC TTCCACGAGG GCAGCGGCGA TCCCGTCCCC
CATCCGCTCA TCCATGCGGT TCCCGATGCC ACCGCCTCCA GCCTGCACCA GGGGGTGGTG
CTGGTTTCCC GCGATGGCCG TGAGTTTGCG GTCGAGGAGG TCTCCGCGCC CATCCGCGAC
CGCGACGGCC ACGTGATCGG CGCGGCCCTG GTGTTCCGGG ACGTCACCCA GGCCCGCGAG
ATGGCGCGCA AGCTCTCCTG GGCCGCCACC CATGACAGCC TCACGGGCCT GGTCAACCGC
GCCGAGTTCG AGCGCCGCCT GGATCTCTTG GTCACCACCG CCCGCCAGGA AGGGCGCGGC
CATGCGGTGC TGTTCATGGA CCTGGACCAG TTCAAGCTGG TCAACGACAC CTGCGGCCAC
GCCGCGGGCG ACGAACTGCT GCGCCAGCTC ACCCGCCGCC TGCAGGGACA ACTGCGGGAC
AACGATACCC TGGCACGATT GGGCGGGGAC GAGTTCGGCG TGCTGCTCGA GGGCTGCCCC
ATGGAGCGTG CCGGGCAGAT CGCTGAGACC CTGCGCGCCA CGGTCGCCGA GTTCCGCTTC
CAGTGGCAGG AGAAGATCTA CACCGTGGGG GTGTGCATCG GCGTGGCGCC CATCGATGAG
CATATCAAGA GCGTGGCCAG CCTGATGAGC GACGCGGATG CCGCCTGCTA CCTGGCCAAG
GAACAGGGCC GCAACCGCAT CCACATCATC CAGCACGGCG ACCAGGCCCT GAGCCGGCGC
CAGGGAGAGA TGAGCTGGGT GCAGCGCATC AACGAGGCCC TGGAGCGGGA TCGCTTCTGC
CTCTATCACC AGCACATCGT GCCGGTGTCC GGGAACGAGC CCCCCCACAC GGAGGTGCTG
GTGCGCATGC TGGATGAGGA CGGCGCCATC ATCGCGCCCA TGGCCTTCAT CCCCGCGGCG
GAACGCTACG GCCTGATGCC GGCCATCGAT CGCTGGGTCA TCGCGCGGGT CCTGAACCAC
CTGCGCATCC CGGGTCCGCG CCCGCACGGG CTCTACGCCA TCAATCTCTC GGGTCAGTCC
CTGTGCGACA ACCAGATGCT GGACTTCATC CTCGACATGC TGGCGCGCAC CGGGGTGGAG
CCCGGCCGGG TCTGCTTCGA GATCACCGAG ACCACCGCCA TCGCCAACCT CACCCAGGCC
GAGCGTTTCA TGTCGGCACT GAGAAACCTG GGCTGCCGGT TCGCCCTGGA CGACTTCGGG
ACCGGCATGT CCTCCTTCGG CTACCTGAAA CAGCTCAAGG TGGACTTTCT CAAGATCGAC
GGCAGCTTCG TGCGCGACAT GAACGAGGAC CCCATCAACC GGGCCATGGT GGAAAGCATC
AACCACATCG GCCACATCAT GGGCATCCAG ACCATCGCGG AATGCGTGGC CCACGAGGCG
GTGATGGATC ACCTCAAGGC CATCGGCGTG AACTACGGCC AGGGCTTCGG CCTGCACATG
CCCGCGCCCC TGGAACCCGC GGCCCTGCCC GGGCGCGCCG ACAATGTCAT TCCCCTAAGC
ACAAAAAAGG CCGGGGCCTG A
|
|---|
| Protein sequence | MKDNQVQLAE RPHSPVFAAR SRSTILVGFG IVLCLMAIMI VLGLSRMAHV QDRLERIVHE
HNVKTELLGN MRNAARERSV TLLRLAITTD PFDLDAGIMD FRQEASQFMV NRGRLTQMSL
SAREEALLED SRGLTVRAVQ AQEAVLEHIL NGEAEHANRV LLEQAIPLQN AVLANLDALL
ALQREAGETM VEEAAARYRS AVILMSLLGL AALLLGALVG RTVGLRTARV EADLYREKER
AQVTLHAIGD AVITTDTQGL VDYLNPVAEH LTGWRNHLAR GRSLAEVFRT FHEGSGDPVP
HPLIHAVPDA TASSLHQGVV LVSRDGREFA VEEVSAPIRD RDGHVIGAAL VFRDVTQARE
MARKLSWAAT HDSLTGLVNR AEFERRLDLL VTTARQEGRG HAVLFMDLDQ FKLVNDTCGH
AAGDELLRQL TRRLQGQLRD NDTLARLGGD EFGVLLEGCP MERAGQIAET LRATVAEFRF
QWQEKIYTVG VCIGVAPIDE HIKSVASLMS DADAACYLAK EQGRNRIHII QHGDQALSRR
QGEMSWVQRI NEALERDRFC LYHQHIVPVS GNEPPHTEVL VRMLDEDGAI IAPMAFIPAA
ERYGLMPAID RWVIARVLNH LRIPGPRPHG LYAINLSGQS LCDNQMLDFI LDMLARTGVE
PGRVCFEITE TTAIANLTQA ERFMSALRNL GCRFALDDFG TGMSSFGYLK QLKVDFLKID
GSFVRDMNED PINRAMVESI NHIGHIMGIQ TIAECVAHEA VMDHLKAIGV NYGQGFGLHM
PAPLEPAALP GRADNVIPLS TKKAGA
|
|---|
| |