| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_21200 |
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| Symbol | |
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| ID | 7313358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | - |
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| Start bp | 2307650 |
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| End bp | 2311162 |
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| Gene Length | 3513 bp |
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| Protein Length | 1170 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643612572 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002509860 |
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| Protein GI | 220932952 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.010694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAT CAGATCTGCT ATTATCAAGC GAGAAGACGG AAAAAATAAT GAAGGGTATT
AATCAGGGGC AGAACCTGTT TATTGAAGGA ATGCCGGGGA ACCGGTTTGC TTTTATTACT
GGAAATATAT TACAGAAAAT AGACAAAACG GTACTCATGG TAACATATGA TACGGTACAC
CTCAACCGTT ATTATGAAGA CCTGATCCGG ATGATGCCGG AGGAAAAGGT CTTACTCTAT
CCTGAATCAG AGGTTTTACC CCATGAGCAG ATTGTACCTG ATCTGGCTGA AACGGCCCAG
AGGATTAGAG TATTACAGAG TGTTATTACA GATAAGAAAC CCGCGGTTTT ATTAACAACT
GCTACAGCCC TGTTGAGAAA AATGATTCCT GTCAGTACTT TCAAAAAATA TATTTTTTCA
TTACAGGTAG GTCAGGAAAT AGATTTAAAT AAATTTACGG AAAAGCTTAG AATATCAGGG
TATAACCGGG TAGAGATGGT TGAAAACCCG GGAGAATTCA GTATCAGGGG TGGAATTATA
GATATTTTTC CTTTATCGGT TAACAAACCC TTCCGGATAG AATTATTCGG GGATGAGATA
GATACTATAA GGGAATTTGA ACCTGCTACC CAGAGATCCC GGAGGAGTCT AGAAAAGGTC
TTTATATCTC CAGCCCGGGA AATAATTGTT TCCCCCCGGC AGATTAAAAA AGCCATTCCG
GCTATTAAAT CTGATTTTAA TGATACCATA AATACCCTGT ATGAAAACAA CTATAAAGAA
GAGGGAGATT ATCTAAGGGA AAAAAGGGAT GAAAGCCTGG AGAAGCTGGC TGAAAGAGAT
GATTTTCCAG GCTCTGAACA GTTTTTACCC TATTATTATC CCGAACTTCA CACTTTAATA
GATTACCTGC CTGATGATTC TGTAATCTTT TTTGATCAGG CTGAAAAAAC CTGGCAGAGG
ATAAAGGGAT TTATAGATGA ACTTCAGGAA ACCCAGGCTA CCTTACTGGA GCAGGGGAGT
GTTCTTCCTA CTTACCATAA AAACTTTCTG TCACGGGAAG CTTTACTTGA TAAGCTTAAG
GACTTTAATT TTGTTTATAG CAGCACTTCA ATTAATGAAG AATTGTCCTG GGTTAAGGAT
TTTGAAAAGG TCTCTTTTAC GACCCGGAGT GTTGAGCCCT ATCACGGTAA GCTGGATTTA
TTTGCAGAGC GGGTCCGGGA ATTGGTTGAC ACAGGATACC GGGTATTTGT TACTTTAAAT
TCAAGTAATA AGGCCAGGCG GGTGGTTAAT TACCTTAAAG AGAACGAAAT GGCTGTTGCT
TTCAGGAGAG AGGAATTTTC CCGGGAACGG ATAATTGTTA TGCCGGGGAG TCTGTCTGAG
GGTTTTATTA TTGATGATAT AAACCTGGCC CTTTTTACGG AAAAGGAAGT CCTGGGTAAT
CCCCAGAAAA AAAGGCGGCA GCTTAATGAT ATTGAAAACG GGGTAAAGAT TTCCTCTATA
GACGAATTAC AGGTTGGAGA CTATGTTGTT CATGAAAACC ATGGAATAGG GAAATATCTC
GGGGTAAAGA CGCTGGCGGT ACAGGGTCAG CACAAGGACT ATCTGGTTTT AAAATATGCC
GGGGAAGATA AATTATATGT GCCGACTGAT CAGTTTAATC TGGTTCAGAA GTATATCGGG
GCCGATAATA AACCCCCTAA ATTATATAAA CTCGGGGGAA ATGACTGGAA AAAGGTTAAA
CAGAAGGTTA AGGAATCGGT TAAAGAAATG GCCATTGGCT TATTAGAACT TTATGCCGAG
CGGGAAACAA TAAAAGGCTA TTCTTTTTCT GATGATACAG TCTGGCAGAA GGAATTTGAA
GAGGCCTTTC CCTATGAAGA AACCCCTGAT CAGTTAAAAG CCATTGAAGA GGTAAAAAAT
GATATGGAAT CGGCGACCCC CATGGACCGG TTATTATGTG GGGATGTTGG TTACGGGAAG
ACCGAAGTGG CGATCAGGGC TGCTTTTAAG GCGGTAATGG ACGGAAAGCA GACTGCTGTT
TTAGTCCCGA CAACTATTCT GGCCCAGCAG CATTATAATA CCTTCAGTGA GAGAATGAAA
AACTACCCCA TTAATATTGA AATGATCAGT CGCTTTAAAA CCCCGGCTGA GCAGAGGGAG
GTCCTCAAAA AACTGGCCGC CGGGGAAGTA GATATTATTA TCGGGACTCA CCGTCTCCTT
TCCAGAGATG TAGTTTTTAA TGACCTGGGA TTGTTAATTA TTGATGAGGA ACAGCGTTTC
GGGGTATCTC ATAAAGAAAA GATAAAGGAC TTAAAAAGGA ATGTCGATGT CCTGACCATG
ACGGCAACCC CGATCCCCCG TACCCTCCAT ATGGCTCTGG TTGGAGTCAG GGATATGAGT
GTTATTGAGA CCCCACCCGA GAACCGCTAT CCCATTAGAA CCTATATCAG AGAGTTTAAT
AAAGAATTGA TCCGGGATGC GGTCAGAAAG GAATTGGGGC GGGAAGGTCA GGTATATTTT
GTGCATAACA GGGTCGAAGA TATCCAGGAA CAGGCGACCA TGATTAAAAA GCTGGTCCCT
GAGTGCCGGG TGGCAGTTGC CCATGGTCAG ATGAATGAAC ATAAACTGGA GCGGTTGATG
CTTGATTTTT ATAACCACCA GTACGATGTC CTGGTATGTA CAACAATAAT AGAAACTGGA
CTGGATATCC CCAATGTTAA TACTATTATT GTCAACAGGG CCGATCAGAT GGGATTGGCC
CAGCTATATC AGCTTCGGGG GCGGGTTGGC CGTTCCAACC GGATTGCATA TGCCTATTTG
CTATATGAAA AAGACAGGGT TTTGCCTGAA GTAGCTGAAA AGAGGCTGCG GGCTATTAAA
GAATTTACAA ACCTGGGTTC AGGGTTTAAA ATTGCCATGC GCGATCTGGA AATAAGGGGA
GCTGGAAATT TACTGGGGCC CGAGCAGCAT GGTCATATTG CTTCAGTAGG GTTTTCACTT
TACTGTAAGC TTCTTGAAGG TGCTGTTGAA GAACTTAAGG GCAAAGAAAA AGATAAAGGA
ATTACCCGGG TTGAGATTGA ACTGGATATT GATGCCTATC TTCCAGATGA ATATATAACA
GATTCCCGCC AGAAGATAGA TATCTATAAA AAGATTATGG CCTTAAAGGA TTTTGAAGAG
GTAGAGGATA TGATTGATGA ACTTATTGAT AGGTTCGGGG ACCCACCTGA GCCTGTGCTA
AATTTGCTGG GAATAAGTAA ACTGAAGGTG AAGGCAAGTA AGCTGGGAAT AGATAAAATA
TCCCGTAATA AAAAGTTTGT GGAGTTTCGT TTTATGAAGC CCGATTACCT CGATGGAGAT
AAAGTAGTTA AATTTGTAAA AAATCATTCC CGGAAGGTAA AAATTAAATC CGGTAAAAGG
CCTGTTATTG CTTACCGTTT GTCCCCCGGG AGAACAACCA TAAAAAGGCT TGAGAAGATC
CTGTCTGAGT TAAAGGCTTC AATTACCATT TAA
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| Protein sequence | MKLSDLLLSS EKTEKIMKGI NQGQNLFIEG MPGNRFAFIT GNILQKIDKT VLMVTYDTVH
LNRYYEDLIR MMPEEKVLLY PESEVLPHEQ IVPDLAETAQ RIRVLQSVIT DKKPAVLLTT
ATALLRKMIP VSTFKKYIFS LQVGQEIDLN KFTEKLRISG YNRVEMVENP GEFSIRGGII
DIFPLSVNKP FRIELFGDEI DTIREFEPAT QRSRRSLEKV FISPAREIIV SPRQIKKAIP
AIKSDFNDTI NTLYENNYKE EGDYLREKRD ESLEKLAERD DFPGSEQFLP YYYPELHTLI
DYLPDDSVIF FDQAEKTWQR IKGFIDELQE TQATLLEQGS VLPTYHKNFL SREALLDKLK
DFNFVYSSTS INEELSWVKD FEKVSFTTRS VEPYHGKLDL FAERVRELVD TGYRVFVTLN
SSNKARRVVN YLKENEMAVA FRREEFSRER IIVMPGSLSE GFIIDDINLA LFTEKEVLGN
PQKKRRQLND IENGVKISSI DELQVGDYVV HENHGIGKYL GVKTLAVQGQ HKDYLVLKYA
GEDKLYVPTD QFNLVQKYIG ADNKPPKLYK LGGNDWKKVK QKVKESVKEM AIGLLELYAE
RETIKGYSFS DDTVWQKEFE EAFPYEETPD QLKAIEEVKN DMESATPMDR LLCGDVGYGK
TEVAIRAAFK AVMDGKQTAV LVPTTILAQQ HYNTFSERMK NYPINIEMIS RFKTPAEQRE
VLKKLAAGEV DIIIGTHRLL SRDVVFNDLG LLIIDEEQRF GVSHKEKIKD LKRNVDVLTM
TATPIPRTLH MALVGVRDMS VIETPPENRY PIRTYIREFN KELIRDAVRK ELGREGQVYF
VHNRVEDIQE QATMIKKLVP ECRVAVAHGQ MNEHKLERLM LDFYNHQYDV LVCTTIIETG
LDIPNVNTII VNRADQMGLA QLYQLRGRVG RSNRIAYAYL LYEKDRVLPE VAEKRLRAIK
EFTNLGSGFK IAMRDLEIRG AGNLLGPEQH GHIASVGFSL YCKLLEGAVE ELKGKEKDKG
ITRVEIELDI DAYLPDEYIT DSRQKIDIYK KIMALKDFEE VEDMIDELID RFGDPPEPVL
NLLGISKLKV KASKLGIDKI SRNKKFVEFR FMKPDYLDGD KVVKFVKNHS RKVKIKSGKR
PVIAYRLSPG RTTIKRLEKI LSELKASITI
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