Gene Hore_20130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_20130 
Symbol 
ID7314337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand+ 
Start bp2169737 
End bp2170807 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content43% 
IMG OID643612459 
ProductNa+/Ca+ antiporter, CaCA family 
Protein accessionYP_002509755 
Protein GI220932847 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein 


Plasmid Coverage information

Num covering plasmid clones52 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCAT TAATACATAA TTATTTAGTT TCATTTCCCA CCCTTGCTCT ACTTATAACG 
ATTGCTATAA TGCTTTACAT TCTCAGTAAA GGTGCTGATA TCCTGGTCGA TGAAGCAGTT 
AAGCTTTCTC TACAGTTAGG TGTTCCTAAA GTAATTATTG GGGCTACTAT TGTCTCCCTG 
GGTACAACCC TGCCCGAAGC TGCTGTCTCT GTTCTGGCTG CCATTAACGG CAATCCTGAT 
CTGGCTTTGG GAAATGCAGT TGGTTCAATT ATTGCTGATA CCGGCCTTAT AATTGGTGTG 
GCGGCCCTTT TAGGATCTCT ACCTGTTAGT AAAATGATTG TCAATCGTCA GGGACGTATC 
CAGGTCTGGG CTGGTATTTT ACTTGCTCTT GTTAGTCTTC CGTTAGTATC TGGTTCCAAT 
ATACCTCAGT GGATAGGGTG GGTATTCATT GTGTTGCTGA TATTGTATAT CTATTCCTCT 
ATTAAATGGA CCCAGAAAAC CGATACAGGC CAGACTGCGG CTACCAGTAT TTCCCGGGGG 
AGTAACGCTA ACCAGCCAAC CCCTGCCCAA TCAGACGTTT CTGTTGAAAT CACTATTAGT 
GAAGATAGTG ACTCATTGGT TTTAAGGATA TTTAAACTGT TTGCAGGCAT TTTCCTGGTT 
ATAGGATCAT CAAAGGTTCT TATCCCGGCG GTAGAGATAA CAGCTATTCG TATTGGAATT 
CCCGAGAGCA TTATTGCAGC GACTCTTGTC GCTTTCGGAA CCAGCTTACC TGAACTTATG 
ACTGCCATTA CTGCTGTCAG AAAGGGGCAC GGAGAACTGG CTGTCGGCAA CATAGTGGGG 
GCAGATATTT TAAATGTACT GTTTGTAGTT GGTAGCGCTG CCTCTGTCAC CGCGGGAGGG 
CTAAATGTGC CGGCTAATTT TTACAGGCTT CAAATACCAA CTATGGTCAT TATTCTGGTA 
ACATTCAGGT TATTCTCCCG GGGAAGAAAT GAAGAGATTA CTAAAAAGGA AGGCATTGTT 
TTATTTCTTC TATATGTTAT CTACCTGATT TTAAACTATA CCTGGGTTTA A
 
Protein sequence
MEALIHNYLV SFPTLALLIT IAIMLYILSK GADILVDEAV KLSLQLGVPK VIIGATIVSL 
GTTLPEAAVS VLAAINGNPD LALGNAVGSI IADTGLIIGV AALLGSLPVS KMIVNRQGRI 
QVWAGILLAL VSLPLVSGSN IPQWIGWVFI VLLILYIYSS IKWTQKTDTG QTAATSISRG 
SNANQPTPAQ SDVSVEITIS EDSDSLVLRI FKLFAGIFLV IGSSKVLIPA VEITAIRIGI 
PESIIAATLV AFGTSLPELM TAITAVRKGH GELAVGNIVG ADILNVLFVV GSAASVTAGG 
LNVPANFYRL QIPTMVIILV TFRLFSRGRN EEITKKEGIV LFLLYVIYLI LNYTWV