Gene Hore_18490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_18490 
Symbol 
ID7313847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp1973825 
End bp1975153 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content38% 
IMG OID643612296 
ProductMATE efflux family protein 
Protein accessionYP_002509593 
Protein GI220932685 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0000174233 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAA GAAAAAGCCT GTTTCAATTA GCTGTACCTA TATTTATTGA GACCCTCCTG 
TTTATGTTGT TGGGTATAGC TGATATTTTT ATGCTAAGTC AATTTGATGA CAGGGCTGCT
GGGGCTGTTG GGGCTTCTAA CCAGGTAATA GGAAATTTAA ATTTAATTTT TGCCATAATT
TCAGCAGGTA CAGCAGTTTT AGTGGCCCAG AATGTGGGAG CAAAAAATAA AAGGGAAATA
GAGAGGGTAT GTTCTATCTC CCTGGTTATG AATTTTGTCA TTGGTCTTTT AGTTAGTATT
ACCATGATAT TCTTTGGTGA TGTGATACTG ACTAAAATGG GTGTTACCCG GAGTCTAATG
GGGTATGCAT CTAATTATAT AAAGATTGTC GGTGGGGCCT TATTTGTTCA GTCAATATTA
AATACTGTTA CTGTAATCAT CAGGAGCCAT GGCTATACCA GGGAAAGTAT GTTAATAACA
GTCGGGATGA ATATTTTAAA TATCTTTGGT GATGCTGTTT TTATCTTTGG CCTGTTTGGG
GCTCCGGTAC TGGGTGTTAA AGGGGTCGCT ATTGCTACTA CTGTAAGTAG AATACTGGCT
ACGATTATAG CATTTATATT TTTGTTCAAG GGGCTGGTAC CAGTTAGTAT GTTTAAATAT
TTATATGATA AACCTGTAGG TACTTTTAAA AAACTAATAA AAATTGGCTT CCCATCTGCT
ATGGAGAATA TGTCTTATTC CCTAGCCCAA ACAGTAATAA TGAGTATTAT ATTATTAAAT
TTAGGGGAAC AGGCCTATAT TGCCAGGACT TATATCTGGA CATTGAGCTG GTTTGTGGTC
TTGTTTTCAA TTTCTATCGG GCAGGCCAAC CAGATTATGA TTGGCCAGTT AACCGGGGCT
GGTAAAGTGG AAGAGGCCTA TCATACCGGG CTTAATAACT TTAAAACAGC TATGTTATTT
TCAGTTCTTG GGGGAATAGC TTTAATAATT TTTAGAAGAA AGTTAATAGG TATTTATACT
GATAACCAGG ATATTATTTT GATAGGGTCA ATTACCCTGA TAGTGGATGC TTTCCTTGAA
CCCGGTAGAA CCTTTAATAT TGTCCTTATT AATGGTTTAA GGGGGGCAGG AGATGTTATT
TTTCCCGTTG TTATGGCCAT TATAAGTATG TGGGGTCTTG GCGTTACAAC TGCATACTAT
TTTGGTGTTG TTCTGGGACT GGGTCTTCCC GGTATCTGGA TGGGTTTAAT ACTTGATGAG
TGGTTCCGCG GGGTCTGCAT GTTATTCAGG TGGCGAGGGA AAAAATGGGT AAGAAAAGTG
ATGGTGTAG
 
Protein sequence
MEKRKSLFQL AVPIFIETLL FMLLGIADIF MLSQFDDRAA GAVGASNQVI GNLNLIFAII 
SAGTAVLVAQ NVGAKNKREI ERVCSISLVM NFVIGLLVSI TMIFFGDVIL TKMGVTRSLM
GYASNYIKIV GGALFVQSIL NTVTVIIRSH GYTRESMLIT VGMNILNIFG DAVFIFGLFG
APVLGVKGVA IATTVSRILA TIIAFIFLFK GLVPVSMFKY LYDKPVGTFK KLIKIGFPSA
MENMSYSLAQ TVIMSIILLN LGEQAYIART YIWTLSWFVV LFSISIGQAN QIMIGQLTGA
GKVEEAYHTG LNNFKTAMLF SVLGGIALII FRRKLIGIYT DNQDIILIGS ITLIVDAFLE
PGRTFNIVLI NGLRGAGDVI FPVVMAIISM WGLGVTTAYY FGVVLGLGLP GIWMGLILDE
WFRGVCMLFR WRGKKWVRKV MV