| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_15220 |
|---|
| Symbol | |
|---|
| ID | 7313115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 1626098 |
|---|
| End bp | 1628566 |
|---|
| Gene Length | 2469 bp |
|---|
| Protein Length | 822 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 643611964 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_002509266 |
|---|
| Protein GI | 220932358 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.280278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAAAAT TATTTTCACA CTATTCTTCA AATAAAAAAA GAGAGTTAGA AGTTCATTTG
AAAAATGTAG CAGAAGGCTG TAAAAATATT ATCTTAAACA AGCGGTTAGA CTTATCTATA
ATATCCAAAG ATGAACTTAC TGATATAGCT TTTTTAATTG GAGCAGTCCA TGATTTTGGA
AAGTCAACTA CTTTTTTTCA AAATTATTTA GTCCATGGTG AGGAAAATAT TTTTTCTCAC
CATGGTTTAA TATCAGCGAT ATTGGCCTAT ATTTTACTCA AGAAAAAATA CACCAGGTTA
ATGGCAATGA TAGGTTATAT GGTTGTTAAA AGACATCATG GGAACCTGGA ATCCCCTGTA
GAAGATTGTG GTGAGACTTT CTATCATATA AAAATGCAAA TTAATGATAT AAAACAAAAT
ACATATAATC ATGTAAAAAA TATTTATGAT AATAATATAT TAAAAGATAC AGAATATTGC
TTTGAAGAGT TATTTAGTGA ATTAGAAGAA TTTGTTGTGG AAGTAGATGA TATTTCTGAA
TTATTTAGAG AAATAGTTAT TGAAGACAAG TATAAGAATG AAGACAAGGC TATTGAATTA
TTTTTAGTAA CTAATTTGCT TTATTCAATA TTAATTGATA CTGACAAAAA GGATGCTGCG
AGTTTAAATA ATGATTATTT TAAAGGAGCG ACAGAAGAAT ATATAAATGT GCAAAAGTAT
ATTAATAAAA AAAGGAAAGA GCAACCAAAA AAATATAATC CTGGATTACC TATTAATAAA
GCAAGAAATA GTTTTTTTCA AGATGTTACA AATCATTCAC AAATAAAAGA TACAAATTTT
TTATATAGTT TAACTGCTCC TACAGGTATT GGTAAGACAT TTGCATCATT TGCATTTGCA
AACAAATTAA GGGAACTTTC CGCTTACGGG AAAAGAATTA TTTATTGTCT ACCGTATACA
TCTATTATTG ACCAAAATTT TAATGAGTTC GAGAAAATAA TTAATTTTAA CCTTAAAGAA
GTTTACAAAA AAAATCCTTC AAAGTATTTA TTAAAACATC ATTATCTCAC ACCTCTTGAA
CTTAAAAAAA ATATTGACTT AGAAAAAGAC AGCAGGATAA GTAGAGATTT AGAGAAATAC
CTTGATGACA GATTATTATT AGAATCATGG GAATCTGGTA ATATTGTTAC AACTTTTGTG
CAATTACTGG AAAGCATTAT TGGAAATAAA AATAGTTACT TAAAAAAGTT TCATAATATC
GTTAACTCAG TAGTTATACT GGATGAAGTC CAAAATATTC CTGTAGAATA TTATCATGTA
GTTGGAAAAG TATTAAAAAT TCTTGGCAAA AATTTTAATA CTCATATTTT ACTTATGACA
GCTACACAAC CTGAAATAAT TTATGGAAAT GACGTTGTTA ATCTGGTAAA TGAAAAGAAG
TATAATGAAA TGAACGTATT TGATAGAGTT AATCTTAAAA TTATAGATAA ACTAAATCCT
TATAATATTG AAGATTTTTT GGGATATCTT GAATTAAATT TTAACAGTAA AACCGGTTTA
ATAGTCTGTA ATACTATTAG TTCTGCATTA GATATATATA AATATGTCGA TGAGTTATTT
ACTTCAAAAG GCTATCACGT TTACTCATTA ACTACTAATC TAACACCAAT TGATAGACTT
GAAAAAATAG ATGAAATTAA TATGAAGATT GATAAAGGGG AAAAAATAAT AGTTGTATCA
ACTCAATTAA TAGAAGCAGG AGTTGATCTG AGTTTTGAAG AGGTTTTCAG GGATTTTGCA
CCATTAGATT CTATTATACA GGTTGCTGGT CGTTGTAATA GGAGTGGGGA GTTGCCACAA
AAAGGCAAAG TAAATATCAT TATGTTAAAA AATGATAAGG AAGAAATGTA CTGTAATAAA
GTATATGATA AAGTATTACT TGATATATGC AGAGAAGTTT TAAGTGAGAA AAAGTCATTT
ATTGATATGA GTAAAAATTA TTTTTCGAGA ATTAGGGAAA GTTATTTAAG GCAAAGTGAT
AAATTAATGA ATGCAATTTG TAATTTAAAT TATAGTAAAG AAAAAGTTGA CCAGGATCCT
ATTTCAAAAT TTAAAATAGT AAAAGAACAG GGAGGTAAAG ATAACATAAT TATTTGTAAA
AATAAAGATA TAGAAAATAA GATAGAAGAA CTTAAAGAAA TATATGAAGA AATTAAGTTG
AGTTATAATG ATAGAAAAAA ATTAAATAGG TTAATTGCCA AAAAAGAAAT ATTAAACAAA
GAATTAGCCC TATATAAAAT TAATGTTTAT ACTAACCAAT TAAAAGAATA CGAAAAACAC
TATATAATAA AGAAATTTAG ATTTATCAAG TATGTCAGTT ATGAGGATCA GAAAAAGTAT
TTGTATGATG ATAATATTGG TTTTCTTAAA GAACCTAAAA AAAAGTTTGA ATCAACTATG
TTTGCTTAA
|
|---|
| Protein sequence | MEKLFSHYSS NKKRELEVHL KNVAEGCKNI ILNKRLDLSI ISKDELTDIA FLIGAVHDFG
KSTTFFQNYL VHGEENIFSH HGLISAILAY ILLKKKYTRL MAMIGYMVVK RHHGNLESPV
EDCGETFYHI KMQINDIKQN TYNHVKNIYD NNILKDTEYC FEELFSELEE FVVEVDDISE
LFREIVIEDK YKNEDKAIEL FLVTNLLYSI LIDTDKKDAA SLNNDYFKGA TEEYINVQKY
INKKRKEQPK KYNPGLPINK ARNSFFQDVT NHSQIKDTNF LYSLTAPTGI GKTFASFAFA
NKLRELSAYG KRIIYCLPYT SIIDQNFNEF EKIINFNLKE VYKKNPSKYL LKHHYLTPLE
LKKNIDLEKD SRISRDLEKY LDDRLLLESW ESGNIVTTFV QLLESIIGNK NSYLKKFHNI
VNSVVILDEV QNIPVEYYHV VGKVLKILGK NFNTHILLMT ATQPEIIYGN DVVNLVNEKK
YNEMNVFDRV NLKIIDKLNP YNIEDFLGYL ELNFNSKTGL IVCNTISSAL DIYKYVDELF
TSKGYHVYSL TTNLTPIDRL EKIDEINMKI DKGEKIIVVS TQLIEAGVDL SFEEVFRDFA
PLDSIIQVAG RCNRSGELPQ KGKVNIIMLK NDKEEMYCNK VYDKVLLDIC REVLSEKKSF
IDMSKNYFSR IRESYLRQSD KLMNAICNLN YSKEKVDQDP ISKFKIVKEQ GGKDNIIICK
NKDIENKIEE LKEIYEEIKL SYNDRKKLNR LIAKKEILNK ELALYKINVY TNQLKEYEKH
YIIKKFRFIK YVSYEDQKKY LYDDNIGFLK EPKKKFESTM FA
|
|---|
| |