| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_13530 |
|---|
| Symbol | |
|---|
| ID | 7314139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 1450363 |
|---|
| End bp | 1450923 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 643611793 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002509098 |
|---|
| Protein GI | 220932190 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.00114254 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG AAAAAACTTC AAAAGCTATA CTAACTGCGG CCCTTAAACT TTTTTCAAAA
AAGGGTTACA GTAATGTAAC CACAAAAGAA ATATCTGAAA AAGCCGGGGT AAATGAGGTA
ACTATATTTA GACATTTTAA ATCTAAAGAA AAACTCTTTG AAGAAGTATT TGAACAATTT
ATATTTAAAC CAAATATTCC TGATGTTAAT GCCCTGAATA ATAAAAACCC TAAAGAATTT
TTATTATGTA TGGCTCATTC GTTATACGAG ATATTTAAAT ATAATTTATC CTTAATAAAA
ATTGAATTGA AAAATGAGGA AACCTCTATT GATAAAATGA GATTACCTTT AGATAAATTT
GCAAATGAAA TAAAAGATAT TATAATAGAT TATTTAAAAA AGAACAAAGA AATAAATATT
TCTCAACCAG ATATTTTCAC AATTAACTTC CTTTCTGCTG TCTGGGGGCT ATTCATGAAT
AATCATATCA TCAGACCCTT TAAACCAGCA ATTGATTTTA ACACCTGTAT AGAAAAACTG
ATTACTGATC TTCTTGAATA A
|
|---|
| Protein sequence | MSKEKTSKAI LTAALKLFSK KGYSNVTTKE ISEKAGVNEV TIFRHFKSKE KLFEEVFEQF
IFKPNIPDVN ALNNKNPKEF LLCMAHSLYE IFKYNLSLIK IELKNEETSI DKMRLPLDKF
ANEIKDIIID YLKKNKEINI SQPDIFTINF LSAVWGLFMN NHIIRPFKPA IDFNTCIEKL
ITDLLE
|
|---|
| |