| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_12400 |
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| Symbol | |
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| ID | 7313561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | - |
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| Start bp | 1333523 |
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| End bp | 1334599 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643611680 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_002508985 |
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| Protein GI | 220932077 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.0607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAA ATTTCAATCC AGACAAAGTT AAAGAAGTTA AGGAATTAAT TAAAAAAGGT
AAAGAAGAAG GCTATTTGAC CTATGAAGAA ATTATGGATT CTCTGGAAGA GATAGAACTC
TCCTCTGAAG ATATTGAGAA GATATATGAA CTCTTTAACG AGATGAATAT AGATGTAGTT
GATGATGTGG ATGAAGTTGA TGATGATAAA GGAGATGATG ACCTGGAGTT ATCTATACCG
GAAGGGGTTG GAATTGATGA CCCAGTAAGG ATGTATTTAA AAGAAATTGG AAAAGTACCA
CTTCTTACTG CTGAAGAAGA GGTTGATCTG GCAAAAAGAA TTGAACAGGG CGACGAACAG
GCTAAAAGGG AATTGGTTGA AGCTAATCTA AGACTGGTTG TTAGTATTGC TAAAAAGTAT
GTGGGAAGAG GTATGTCTTT CCTTGATTTG ATTCAGGAAG GAAATATGGG TCTTATTAAG
GCTGTTGAAA AATTTGATTA TCGTAAAGGA TATAAATTTA GCACTTATGC TACCTGGTGG
ATTCGCCAGG CTATAACCCG TGCTATTGCT GACCAGGCCC GTACTATACG TATCCCGGTG
CATATGGTAG AAACAATTAA TAAATTGATC AGGGTATCAA GACAATTACT CCAGGAAAAG
GGGCGTGAGC CTACTCCTGA GGAGATTGGT GAAGAAATGG GAATGCCGGC CGAAAAAGTC
CGGGAAATTT TAAAGATTGC CCAGGAACCG GTCTCCCTGG AAACACCTAT TGGTGAAGAA
GAGGATAGTC ATCTTGGTGA TTTTATTGAG GATGAAGATG CCCCAGCACC TGCCTCAGCT
GCTTCATTTA CTCTTTTAAG GGAACAGCTC GATGATGTGC TGGATACACT AACAGATAGA
GAAAAAAGGG TTCTTGAACT ACGTTTTGGT CTGGAGGATG GCCGTCCCCG GACTCTAGAG
GAAGTTGGAA AAGAATTTGG GGTTACCAGA GAAAGAATCA GGCAGATTGA GGCCAAGGCT
TTAAGGAAAC TCCGGCATCC AAGCCGTAGT AAAAAACTCA AAGATTACCT TGAGTAA
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| Protein sequence | MGKNFNPDKV KEVKELIKKG KEEGYLTYEE IMDSLEEIEL SSEDIEKIYE LFNEMNIDVV
DDVDEVDDDK GDDDLELSIP EGVGIDDPVR MYLKEIGKVP LLTAEEEVDL AKRIEQGDEQ
AKRELVEANL RLVVSIAKKY VGRGMSFLDL IQEGNMGLIK AVEKFDYRKG YKFSTYATWW
IRQAITRAIA DQARTIRIPV HMVETINKLI RVSRQLLQEK GREPTPEEIG EEMGMPAEKV
REILKIAQEP VSLETPIGEE EDSHLGDFIE DEDAPAPASA ASFTLLREQL DDVLDTLTDR
EKRVLELRFG LEDGRPRTLE EVGKEFGVTR ERIRQIEAKA LRKLRHPSRS KKLKDYLE
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