Gene Hore_12290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_12290 
Symbol 
ID7313930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp1322662 
End bp1323783 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content43% 
IMG OID643611668 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_002508974 
Protein GI220932066 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00000356741 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCATTA GTTTCAATCT ATTACATCGA GAGATAAACA CCCGGGCCCG GCTGGGAAAG 
CTCAAAACAC CACATGGTGA TATAGATACT CCTATTTTTA TGCCGGTAGG AACCCAGGCT
ACAGTTAAAT CTATGACTCC TGATGAATTA GAGAATATTA AGGCCCAGAT TATTCTATCA
AATACATATC ACCTTTACCT GCGGCCAGGT TCGAGTTTGA TAGATGAGGC TGGAGGGCTC
CATAACTTTA TGAACTGGCA GAAACCAATT TTAACAGATA GTGGGGGCTT TCAGGTATTT
AGTCTATCTG ACCTCAGAGA GATAAAAGAA GAAGGAGTTT ATTTTAGGTC TCACCTTGAT
GGTTCCAGGC ATTTTATATC CCCTGAAAAG GCTATTCAAA TTCAGATGGA ACTGGGAGCG
GATATTATCA TGGCTTTTGA TGAATGCCCT CCCTATCCCA GTGATTATGA TTATGTGGCC
CGGTCCCTTG AAAGAACAGT CAGGTGGGCA AGGCGCTGTA AAAAAGCCCA TGAGAGGGAG
GACCAGGCCC TGTTTGGAAT AATTCAGGGT GGTGTCTACC GGGATTTAAG AAAGCAAAGT
GTTGAAGCAT TGATAGATAT TGGTTTTCCG GGGTATGCTA TAGGTGGATT AAGCGTTGGT
GAGGAGAAAG AAAAGATGCT GGAGGTCCTG GACTTTACAG TACCATTGAT GCCAGAAAAT
AAACCCCGGT ATTTAATGGG TGTTGGTGCT CCTGAAGACC TTGTCGAAGG TGTTATCAGG
GGGGTTGATA TGTTTGACTG TGTTTTACCG ACCAGAATTG CCAGGCACGG GACTGTCTTT
ACCAGTCAGG GCCGGCTAAC TGTCAGGAAT GCCGGGTATG AGAGAGATTT TACACCCCTT
GATCCCGAGT GTGATTGTTA TGTCTGTAAA AACTATACCC GGGCCTATAT CCGCCACTTA
ATAAAAAGAA AAGAAATCCT TGGTGTAAGA TTGACTACCT ACCATAACCT ATATTTTCTC
TTATCTTTGA TGGAGAAAAT AAGGGGAGCT ATAAAGGAAG ACGCCCTGCT TGAATTTAGA
GATGAATTCC TTAGAAAATA TTTAAATAAA GCCTCAATTT AG
 
Protein sequence
MSISFNLLHR EINTRARLGK LKTPHGDIDT PIFMPVGTQA TVKSMTPDEL ENIKAQIILS 
NTYHLYLRPG SSLIDEAGGL HNFMNWQKPI LTDSGGFQVF SLSDLREIKE EGVYFRSHLD
GSRHFISPEK AIQIQMELGA DIIMAFDECP PYPSDYDYVA RSLERTVRWA RRCKKAHERE
DQALFGIIQG GVYRDLRKQS VEALIDIGFP GYAIGGLSVG EEKEKMLEVL DFTVPLMPEN
KPRYLMGVGA PEDLVEGVIR GVDMFDCVLP TRIARHGTVF TSQGRLTVRN AGYERDFTPL
DPECDCYVCK NYTRAYIRHL IKRKEILGVR LTTYHNLYFL LSLMEKIRGA IKEDALLEFR
DEFLRKYLNK ASI