| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_12250 |
|---|
| Symbol | |
|---|
| ID | 7313926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 1319568 |
|---|
| End bp | 1320428 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643611664 |
|---|
| Product | protein-export membrane protein SecF |
|---|
| Protein accession | YP_002508970 |
|---|
| Protein GI | 220932062 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.000312155 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAA TGGGAAAAAG AAAAATATGG TATACTATTT CCCTGACTAT TATTGTCCTG
GGATTAATCT TTTTAATGGT TAAGGGGTTA AATTTCGGGA TCGACTTTCA GGGTGGAACC
CTGATGGAAC TCAAGTTTGA TAAATATGTA AGTAAAGAAG ATGCCAGGGA GGTTCTGGCA
ACACTTAATC TGGCCAAGTC AAGTAAAATT CAACAGACTG AAGAAGTTAA TGGAGTTATT
ATAAGAACCC ATAACTTATC CTCTGAACAG ATTTCGGAGA TTAAACAGGC CTTTAAAGAA
AAGTACCCAT CGACTGAGGT ATTAAGAACA GATATGGTAG GCCCCCTCAT CGGTAAAGAG
TTAAGAATCA AAGCCTTCTG GGCTTTACTG ATAGCTTCTA TAGCCATTGT TTTATATATA
AGTTTAAGGT TTGAATTCAG GTTTGCAATT GTGGCTATTA TAGCCCTGTT ACATGATGTT
ATTATAACTA TAGGACTCTT TGCTATAATT GGCCGGGAGA TTAATACACC CTTTGTTGCT
GCGTTACTGA CTATAGTTGG GTATTCTATT AATGATACCA TTGTTATATT TGATCGTATT
AGGGAGAATA TGAAATTAAT GAGGGGTAAA CCATTTATAG AGCAGGCAAA TCAGGCAGTT
ATTGACACCT TACCACGTTC AATAAATACT TCATTGACTA CTCTTGTTGC TGTTCTGGCT
ATATACCTGT TTGGAGGGGC TTCCATAAAG ACTTTTATGC TGGCCTTATT TATTGGTATT
CTGGCTGGAA CTTATTCTTC AATTTTTGTG GCCAGTCCTC TCCTTGTCAG CTGGGATAAA
AAATTAATTT CTAAAAAATA A
|
|---|
| Protein sequence | MDLMGKRKIW YTISLTIIVL GLIFLMVKGL NFGIDFQGGT LMELKFDKYV SKEDAREVLA
TLNLAKSSKI QQTEEVNGVI IRTHNLSSEQ ISEIKQAFKE KYPSTEVLRT DMVGPLIGKE
LRIKAFWALL IASIAIVLYI SLRFEFRFAI VAIIALLHDV IITIGLFAII GREINTPFVA
ALLTIVGYSI NDTIVIFDRI RENMKLMRGK PFIEQANQAV IDTLPRSINT SLTTLVAVLA
IYLFGGASIK TFMLALFIGI LAGTYSSIFV ASPLLVSWDK KLISKK
|
|---|
| |