| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_10450 |
|---|
| Symbol | |
|---|
| ID | 7314633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 1134659 |
|---|
| End bp | 1136695 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643611484 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_002508796 |
|---|
| Protein GI | 220931888 |
|---|
| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000887819 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCTG CCGGGAATAA TAAAGAAGAA ATCCCTGTAT ATACCCTGGG CCCTTTAATT
CATAATCCAC AGGTTGTAAA AAGATTAAAA GAGATGGGTA TTGAATCTTT AGATTCACTT
GATATAATTG ATAATGGGGT TATCATTATA CGGTCACATG GTGTACCCCC TGATATAATA
GAGAAAGCCC GTCAAAAGGG TTTACATATA ATAGACGCAA CCTGTCCCTA TGTAAAAAAT
GCCCAGAAGT ATGCCAGAGA GCTTGTTGAT AAAGGATACC AGACAATAAT TTTTGGGGAT
AGAGACCACC CGGAAGTTAT CGGTATCAAC GGGGCAGCGC GTAATGAGTC CATTATTATA
AGCAGTGAGA AGGAAATAAA AGATATTAAC CTTTCCAGTA AAGTTGGGCT AATAGCCCAG
ACTACCAAAT CACCTGCTTC TTTTCAAAAG ATTGTAAGTT ATATTTTACC TGAAGTTAAA
GAGTTACGGA TTTACAATAC TATCTGTAGA ACTACAGAAA CAAGGCAAAA ATCTGCCGTT
GATTTAGCCA GACAGGTAGA TGCTATGTTC GTAATTGGGG GAAAAAACAG TGCTAATACT
ACCCGGTTAG CAGAACTGTG TGCTGAAACT GGGACCCCAA CTTATCATAT AGAGACTGCC
GGAGAGATTG ATTTCAGGCA GTTGAAATCT TACAATAAAA TAGGTATTAC AGCAGGGGCT
TCGACCCCAG ACTGGTTAAT TAAGGAGGTT ATTGAGGCTA TGAGTGAAGA AAAAAGAGAT
GCAGAATTAC AGGAAGAAAT TCAAGAGGGA GTAAATACTG ATAATACTCC TGAAACACCA
AATGGTGAAG AAAATCCCAT TGAAAATGAG GAAGAATTTA ACTACGATGA CAATAATCCC
GCTGATTTAA AAAAAGGTCA GCAGGTAAAA GGTAAAGTTG TAGAAATTGG GGATAATGGG
GTTTATGTGG ATGTCGGATA TAAAACCGAA GGTTTAATAC CCCTCAGGGA ATTAAGCCAC
CGGGATTTTG AAGACCCCCA TGAAATTGTC GAAGAAGGTG AAGAAATCGA TGTAATCGTT
CTTACCCTTG AAGATGAAGA AGGAAATATG GTCTTATCAA AAAAACGGGC TGATTTTGAG
AAGGCCTGGG AGCGTATCCT GAAAGCCTAT GAAAATGATG AAATCATCGA AGCAGAAGTT
ACCAGAGAAG TTAAAGGTGG TCTTGTAGTA GATATTGGTC TCCGTGGTTT TGTACATGCT
TCCCATGTGG CAATTGGATA TGTTGAAGAT TTAAGTGATT ATGTTGGGAA AACATTACGT
TTAAAAGTTA TAGAAGTTGA ACGTGATAAA AACAATGTTG TTCTATCTGC TAAAAAAGTT
CTGGAAGAAG AGAGAGAAAA GCAGAAAGAG AAAACCCTGG AAGAATTACA AGAAGGACAG
GTTGTTAAAG GTAAAGTTAC CAAGATAGTA GATTTTGGTG CTTTCGTGGA TCTGGGAGGA
ATTGAAGGCC TCTTACACAT TTCAGAAATG TCCTGGGGTA GGATAGAACA TCCTTCTGAA
GTATTGGAAG AAGGTCAGGA AATAGAGGTT AAAGTACTGG CAGTAAACAA AGAAGAGGAA
AGAATCTCAC TTGGACTAAA ACAGCTTTTA CCTGATCCCT GGGAAGAGTT TGCTAAAAAG
CATTATGAAG GAGAGGTAGT TTCTGGTACA ATTACTAAAA TAGTAGACTT TGGAGCTTTC
ATGGAAATTG AAAATGGTAT AGAGGGATTA ATTCATATTT CACAGCTATC ACATCGTCAT
GTAAAAACTC CAGATGAAGT AGTATCTGTA GGAGAAGAAA TCAAGGCAGA GATTATTAAT
ATTGACCCAG AGCAGAAAAG GGTTGGATTG AGTATAAAAG CACTTGAAGA ACAACCAGAA
ACACCAAAAA AAGTCGAAGC ACCAAAAAAG GAACCTACCA GGGAAAATGA ATCTACCTCT
GGAGTAACCA TTGGAGAGAT TGTTGGGGAT ATTCTTAAAA AAGAAGATGA TAAATAA
|
|---|
| Protein sequence | MEAAGNNKEE IPVYTLGPLI HNPQVVKRLK EMGIESLDSL DIIDNGVIII RSHGVPPDII
EKARQKGLHI IDATCPYVKN AQKYARELVD KGYQTIIFGD RDHPEVIGIN GAARNESIII
SSEKEIKDIN LSSKVGLIAQ TTKSPASFQK IVSYILPEVK ELRIYNTICR TTETRQKSAV
DLARQVDAMF VIGGKNSANT TRLAELCAET GTPTYHIETA GEIDFRQLKS YNKIGITAGA
STPDWLIKEV IEAMSEEKRD AELQEEIQEG VNTDNTPETP NGEENPIENE EEFNYDDNNP
ADLKKGQQVK GKVVEIGDNG VYVDVGYKTE GLIPLRELSH RDFEDPHEIV EEGEEIDVIV
LTLEDEEGNM VLSKKRADFE KAWERILKAY ENDEIIEAEV TREVKGGLVV DIGLRGFVHA
SHVAIGYVED LSDYVGKTLR LKVIEVERDK NNVVLSAKKV LEEEREKQKE KTLEELQEGQ
VVKGKVTKIV DFGAFVDLGG IEGLLHISEM SWGRIEHPSE VLEEGQEIEV KVLAVNKEEE
RISLGLKQLL PDPWEEFAKK HYEGEVVSGT ITKIVDFGAF MEIENGIEGL IHISQLSHRH
VKTPDEVVSV GEEIKAEIIN IDPEQKRVGL SIKALEEQPE TPKKVEAPKK EPTRENESTS
GVTIGEIVGD ILKKEDDK
|
|---|
| |