| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_07870 |
|---|
| Symbol | |
|---|
| ID | 7314774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 845629 |
|---|
| End bp | 846540 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643611218 |
|---|
| Product | tRNA pseudouridine 55 synthase |
|---|
| Protein accession | YP_002508539 |
|---|
| Protein GI | 220931631 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 69 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGGG TAGATGGTAT TATCAGTATA ATAAAACCTC CGGGAATGAC TTCCTTTGAT
GTTGTTGCCT GGATCAGGAA AATGTATTCT GTAAAAAAAG CAGGGCATAC CGGAACCCTG
GATCCTGCAG CCAGTGGTGT ATTACCGGTA TGTCTGGGTA AAGGCACAAA AATCATACCT
TATTTGCCGG ATGAAGTAAA GGGATATGTT GCTGAAATAA CCCTGGGGGT TAAGACCGAT
ACTTTAGATT CAGAAGGTCA GATCATTGAA GAAAACCAGA AATGGGAGTC AATTACTGAT
AGTCATTTAA ATAAGGTGAT TTCTGATTTT CAAGGGGTAA TTGAACAGGT TCCTCCCATG
TATTCTGCCG TCAAATATAA AGGAAAGAGG TTATATGAAC TTGCCCGGGA GGGTAAAAAG
ATAAAAAGAG AACCAAGGCA GGTTGAGATA AAAAAAATAA ATATTCTTGA TATAGACCTT
CCTAAAGTAA AATTATTTGT TTTATGCTCT CCAGGAACCT ATATCAGGTC AATTGCCCGT
GATATTGGAG AAAAGCTTGG CTGTGGAGCT TACCTGTCAT TTCTGGTAAG AACCAGATCA
GGTTCGTTTA ATTTAGAAAA TAGTTTTACG TTATCTGAAA TAAAATTCAG GGGGGATAAA
TTATTATATA ATTTTGACTA TCCCCTTACT AACCATTTTA CCAGAATCGA TATCAGGAGA
GGTTCGCGTC AGAAGGTTTA TAATGGTGCT CCCCTGTATG GAAGTGATAT AGCAAAAATA
TATGGTAAAG TTACTTTAAG GGATAAAGTA TTGATTTATA ATAATAATAC TTTTCTGGCC
ATATACCGGG TTAGTGATGT AGCAGGAAAT CAGATTAACT TAAACGCGGA ACGTGTATTT
AAAACATCAT AA
|
|---|
| Protein sequence | MSRVDGIISI IKPPGMTSFD VVAWIRKMYS VKKAGHTGTL DPAASGVLPV CLGKGTKIIP
YLPDEVKGYV AEITLGVKTD TLDSEGQIIE ENQKWESITD SHLNKVISDF QGVIEQVPPM
YSAVKYKGKR LYELAREGKK IKREPRQVEI KKINILDIDL PKVKLFVLCS PGTYIRSIAR
DIGEKLGCGA YLSFLVRTRS GSFNLENSFT LSEIKFRGDK LLYNFDYPLT NHFTRIDIRR
GSRQKVYNGA PLYGSDIAKI YGKVTLRDKV LIYNNNTFLA IYRVSDVAGN QINLNAERVF
KTS
|
|---|
| |