Gene Hore_06530 details

Gene Information

• Locus tag: Hore_06530
• ID: 7314559
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothermothrix orenii H 168
• Kingdom: Bacteria
• Replicon accession: NC_011899
• Strand: +
• Start bp: 707818
• End bp: 709728
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643611084
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_002508405
• Protein GI: 220931497
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000000553997
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCAATA TATTTGATAA AGTTAATTCC CCTGAGGATT TGAAATCCTT AAATATTGAG 
GACCTCAACA GTCTTGCCCA GGAAGTTAGA AAGTTTATTA TTGAAACAGT GGCAGATACA 
GGGGGCCATC TTGCTTCCAA CCTTGGTGTT GTTGAACTGA CGCTGGCTCT GCATTATCAT 
TTGAACAGTC CCAAGGATAA AATAATCTGG GATGTCGGTC ACCAGTCTTA TACCCATAAA 
ATACTGACCG GTCGCAAAAA AAAATTTCAT ACTATAAGAC AGTATAAGGG ACTAAGTGGT 
TTTCCAAAGT ATAGTGAAAG TATTCATGAC GTTATAGAGA CAGGTCATAG TAGCACATCG 
ATATCTGCAG CCCTGGGTCT GGCCCTGGCC AGGGATTTAA AGAACAGAAA TGACAGGATA 
TATGCAGTAA TTGGTGATGG TGCTCTGACG GGTGGAATGG CCTTTGAAGC CCTCAACCAT 
GCCGGGCACC TGGGAACGGA TATTAAGGTT GTATTGAATG ATAATGCAAT GTCTATATCT 
AAAAATGTAG GTGCCCTTTC TCATTATTTA TCCCGGATTA GAACAGATCC GACTCTGAGT 
AAATTTAAAG ATGATGTTGA GGTTTTATTG AGCCGCATTC CTAAAATTGG TAATACTGTT 
TCCCGGAGTG TGGAAAGAGT AAAGGATGGA TTAAAGTATT TATTCCTATC CGGGGTGCTC 
TTTGAGGAAA TGGGCTTTAC TTATATGGGG CCCCTTGATG GCCATAATAT ACAGGAATTA 
ATTACAAACT TCAAGAATGC AGACAACATT AAGGGACCGG TTTTAATACA TGTTAATACC 
AAAAAAGGTA AAGGGTATAA ACCTGCTGAA AGTCAGCCAA GTAAGTTTCA TGGGGTAAGC 
CCTTTCAAAA TTGATAATGG TGAAAGTAAG CGGAAAAAAA GTAATTTCAC CTATAGTCAG 
GTATTTGGAC AGACCATGGT TAAACTGGGT AATAAAGATA AAAAAATAGT TGGCATTACT 
GCAGCTATGC CTGAAGGAAC GGGTTTAAGT TACTTCAAAA AAGAATTTCC TGATAGATTT 
TTTGATGTTG GCATCGCTGA ACAGCATGCG GTGACCCTGG CCACTGGAAT GGCCCGGGCG 
GGTATGAAAC CGGTTGTGGC CATATATTCT ACCTTTTTGC AAAGGGCATA TGATCAGGTT 
ATACATGATG CCTGTATTCA AAATTTACCT GTTACTTTTG CCATTGACAG GGCGGGAATA 
GTTGGTGCTG ATGGGGAAAC CCACCATGGC CTGTTTGATT TATCATTTCT TAGAGCAATT 
CCAAATATTA TAATTATGGC TCCGAAAAAT GAAAATGAAC TACAGCATAT GATCTATACA 
GCTATAAATA ATGACCAACC GGTAGCTATC AGATATCCAC GGGGTGAAGG CTATGGAGTA 
GAACTTGATA ATGATTTTTC AACTATACCG ATTGGCAAAG GTGAGCTCCT ATGTGATGGA 
AAAGATGTTT TAATTATTGC AGTAGGCTCA CGGGTTTATC CGGCTATGGA AGCAGCCAGA 
GTGTTGAGCC AACAGGGAAT AAAGGCAGCT GTTATAAACG CCAGATTTAT AAAACCTCTG 
GATAAAAATT TAATATTAAA CAAAATAAAT GAATGTAAAA AGGTTATTAC AGTCGAAGAG 
CATGCTTTAA AAGGAGGATT TGGTTCAGCC ATCCTTGAAT TTATTAATGA AAATGACCTG 
AGAGGAATAA AGGTCAAGAG ATTGGGATTG CCTGACCGCT TTTTGCCCCA TGGACCTACC 
GGCCATCTCC AGACAATTTA TCATATAGAC AAAAATGCGA TTATAGAATC TGCCTTAAAG 
TTAGTTGACG AAAGGGTGGA ATTAGGTCTA TGGCCCGGAA AAAACGCCTA G 

 

Protein sequence

MGNIFDKVNS PEDLKSLNIE DLNSLAQEVR KFIIETVADT GGHLASNLGV VELTLALHYH 
LNSPKDKIIW DVGHQSYTHK ILTGRKKKFH TIRQYKGLSG FPKYSESIHD VIETGHSSTS 
ISAALGLALA RDLKNRNDRI YAVIGDGALT GGMAFEALNH AGHLGTDIKV VLNDNAMSIS 
KNVGALSHYL SRIRTDPTLS KFKDDVEVLL SRIPKIGNTV SRSVERVKDG LKYLFLSGVL 
FEEMGFTYMG PLDGHNIQEL ITNFKNADNI KGPVLIHVNT KKGKGYKPAE SQPSKFHGVS 
PFKIDNGESK RKKSNFTYSQ VFGQTMVKLG NKDKKIVGIT AAMPEGTGLS YFKKEFPDRF 
FDVGIAEQHA VTLATGMARA GMKPVVAIYS TFLQRAYDQV IHDACIQNLP VTFAIDRAGI 
VGADGETHHG LFDLSFLRAI PNIIIMAPKN ENELQHMIYT AINNDQPVAI RYPRGEGYGV 
ELDNDFSTIP IGKGELLCDG KDVLIIAVGS RVYPAMEAAR VLSQQGIKAA VINARFIKPL 
DKNLILNKIN ECKKVITVEE HALKGGFGSA ILEFINENDL RGIKVKRLGL PDRFLPHGPT 
GHLQTIYHID KNAIIESALK LVDERVELGL WPGKNA