Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hore_06440 |
Symbol | |
ID | 7314549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothermothrix orenii H 168 |
Kingdom | Bacteria |
Replicon accession | NC_011899 |
Strand | - |
Start bp | 698694 |
End bp | 699911 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643611074 |
Product | polysaccharide deacetylase |
Protein accession | YP_002508396 |
Protein GI | 220931488 |
COG category | [G] Carbohydrate transport and metabolism [R] General function prediction only |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase [COG3858] Predicted glycosyl hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.467697 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT TTTACTATCA TTATTTGAAA TCTTTATCAA TGTACTTATC CCTTATTATT ATATTAACAC TTTTTATGCC TCTCAATATT GAAGCTGCTA AAGTACACCG GGTAAAACCC GGGGAAAATC TTTATAGTAT AGCCAGAAAA TATGGTGTAA CCGTTAATGA AATTATCAGA ACAAACAATT TACGTAATCC CGGTCAATTT TTTTCAACCC AGGCATTAAT TATCCCTGAT GCTTACCGCC CCAATATTTA TCGTGTCCAG AAAGGAGATA CTCTTTATCT AATCTCTAAA AAGCTGGAAA TACCAATGGA TTTTTTAGCA AAAGTAAATT ACCTGACCGA TAAAGATGAA CTATATGAAC GCCAGGTTCT CTATGTTCCT GCCTGGCCCA GGTTTCATAA AGTTAAACCC GGTGACACCC TTTATAAAAT ATCAAAAAGA TATGGAATTT CTTTAAAGAG AATTAAAGAA GCAAACCAGT TATACAGTCA TAATAACCTG AAAATAGGTC AGTATATCAA AGTACCGGCT CCGGAGTATA AACCACCTGA AAGAAAAGAC CCCCAGTATA CAAAGTTATT TCCTGATACC TTTTTCTTAT CAGGTAAAAC CAACGGATAT AATATAGCCT TAACCTTTGA TGACGGTCCT GATAACATTT ATACCCCTAA AATCCTTGAT ATACTAAAAA AATATAATGT AAGAGCCACC TTCTTTTTAA TGGGTAGCAG GGCTGACAGA TACCCTGATA TTGTAAAACG AATGGTCAGG GAAGGCCATA TAGTAGCTAA CCACACCTGG TCCCATGTAA ACCTGAACAA AACAACATCG TCACGTTTCT ATAATGAAAT TACAAATACC AGTAATACAA TAAAAAATCA TACCAGTCTT ACACCGGCTT TAGTACGGCC ACCTTATGGA GCAGTGTCTA CCAGTGTAAT TAAGCGACTT AAAAATATGG GTTTTAAGGT TATATTCTGG TCAGTAGATT CCAGGGACTG GAATACCCAG GATGTTGATA AAATTTTAAT TAATACCCTG CCAAATGTCA GAAAGGACTC CATAATTCTC TTTCATTCAG CCGGTGGTGA AGGCCACGAT CTCTCGGCAA CTGTCAGGGC TTTACCGGAG TTAATTAATA CCTTAAGAAT GCTTGACTAT CGCTTTGTAA ACCTGACCCA GCTTCTTGGC ATTAAGGCAT ACCAGTAA
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Protein sequence | MKKFYYHYLK SLSMYLSLII ILTLFMPLNI EAAKVHRVKP GENLYSIARK YGVTVNEIIR TNNLRNPGQF FSTQALIIPD AYRPNIYRVQ KGDTLYLISK KLEIPMDFLA KVNYLTDKDE LYERQVLYVP AWPRFHKVKP GDTLYKISKR YGISLKRIKE ANQLYSHNNL KIGQYIKVPA PEYKPPERKD PQYTKLFPDT FFLSGKTNGY NIALTFDDGP DNIYTPKILD ILKKYNVRAT FFLMGSRADR YPDIVKRMVR EGHIVANHTW SHVNLNKTTS SRFYNEITNT SNTIKNHTSL TPALVRPPYG AVSTSVIKRL KNMGFKVIFW SVDSRDWNTQ DVDKILINTL PNVRKDSIIL FHSAGGEGHD LSATVRALPE LINTLRMLDY RFVNLTQLLG IKAYQ
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