| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_05990 |
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| Symbol | |
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| ID | 7314504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | + |
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| Start bp | 651872 |
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| End bp | 653077 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643611029 |
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| Product | Tfp pilus biogenesis protein PilC |
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| Protein accession | YP_002508351 |
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| Protein GI | 220931443 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 54 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCGG AGTTTGAATA TGAAGCGGTA AGTAAAAGTG GAGAACGAAT TAAAGGTACT
ATTACAGCTG ATAACTCGAC AGTGGTTGCC AGGCAGCTCC GGGAAGAGGG CTATTATATA
ACTTCAATTG AAGAACAGGT AGAGAGAAAA GAAATTAATA TTCAACTCAG TAACAGGGTT
AAAACAAAGG ACCTGGTATT GTTTACCCAG CAGTTTTCAG TATTGCTCAA TGCCGGTATT
TCTCTGGTTG AAGCCCTGGA TATTATGTAT GACCAGGTTG AACACCCCCG TTTGAAGGAG
GTTGTTCGCT CCATACAGGA GGATGTGGAA ACAGGTTCTT CCCTGACCGA TGCCCTTTTA
AAACACCCTG ATGTGTTTCC GGAATTATAC TGTCAGATGG TTAAAGCCGG TGAAGCCGGT
GGTGTGCTTG ACCAGGTCCT GGAACAATTA AGTGCCCATT ATGAGAGGCA GGATGAAATT
AATAGCAAGG TTAAGTCAGC CATGTATTAT CCGGTGATTT TACTGGTGGT AGCGGTTGGT
GTCGTTATTT TTCTCATGAC CCGGGTTGTT CCCCAGTTTA TCAGTCTCTT TTCATCTATG
GACGTTGAGC TGCCATTACC GACCAGGATA TTAATTAAAT TAAGTACCTT TTTATCCTCA
TACTGGTGGG CCCTGTTTGG GGGGCTGGGA TTGACTGTAG CCCTTTTATT AAAATATAAA
AGTACTCCCG AGGGAAGACG CCGGTTTGAT AGTTTAATTC TCAAGATCCC TGTGTTCGGT
AAGTTAATGC GGAAAATATA TGTATCCCGT TTTACCAATA CCCTGTCTAT CCTGTTAACA
AGTGGGATAG ACATTATATC AGCCCTTGCT ATTGTCGAAG AGGTGGTGGG AAATAAGGTT
TTTTCAGATG TGATTTCCCG CTCCCGCACC CAGGTAAGTG AAGGGATATC CCTTTCCCGG
CCTCTTGATG AGAGTGGGGA GTTTCCCCGG ATGGTTATTC AGATGATCAA TGTTGGCGAG
GAAGCAGGTT CCCTGGATAA TATGCTGCAG AAGGTTTCAG ATTTTTATGA TAAAGAAGTG
GAAACCAGTA TCAACAATAC TGTTTCCCTT ATTGAACCCC TTATGATAGT GGTTCTGGCG
GTTATCGTTG GGTTTATTGT AATGTCCATT ATATTACCCA TGTTTGAAAT GTATGAACAA
TTTTAG
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| Protein sequence | MAPEFEYEAV SKSGERIKGT ITADNSTVVA RQLREEGYYI TSIEEQVERK EINIQLSNRV
KTKDLVLFTQ QFSVLLNAGI SLVEALDIMY DQVEHPRLKE VVRSIQEDVE TGSSLTDALL
KHPDVFPELY CQMVKAGEAG GVLDQVLEQL SAHYERQDEI NSKVKSAMYY PVILLVVAVG
VVIFLMTRVV PQFISLFSSM DVELPLPTRI LIKLSTFLSS YWWALFGGLG LTVALLLKYK
STPEGRRRFD SLILKIPVFG KLMRKIYVSR FTNTLSILLT SGIDIISALA IVEEVVGNKV
FSDVISRSRT QVSEGISLSR PLDESGEFPR MVIQMINVGE EAGSLDNMLQ KVSDFYDKEV
ETSINNTVSL IEPLMIVVLA VIVGFIVMSI ILPMFEMYEQ F
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